Wall clock time and date at job start Mon Mar 30 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00057 * 2 1 4 4 H 1.48494 * 109.47277 * 239.99442 * 3 2 1 5 5 H 1.48500 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46956 * 119.99280 * 3 2 1 7 7 C 1.37878 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99771 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00192 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47180 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47012 * 305.00231 * 10 9 7 12 12 N 1.46903 * 109.47058 * 65.00028 * 10 9 7 13 13 C 1.50699 * 109.47170 * 184.99839 * 10 9 7 14 14 C 1.39421 * 120.20662 * 286.84766 * 13 10 9 15 15 C 1.46789 * 134.32632 * 359.97438 * 14 13 10 16 16 C 1.33993 * 106.18626 * 179.97438 * 15 14 13 17 17 O 1.34450 * 110.15427 * 0.02562 * 16 15 14 18 18 C 1.34854 * 110.88861 * 359.97438 * 17 16 15 19 19 C 1.38926 * 133.39805 * 179.97438 * 18 17 16 20 20 C 1.37804 * 119.97795 * 180.02562 * 19 18 17 21 21 C 1.37826 * 120.20428 * 106.57168 * 13 10 9 22 22 Cl 1.73601 * 119.87455 * 0.02562 * 21 13 10 23 23 H 0.97003 * 120.00027 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47047 * 59.99966 * 9 7 2 25 25 H 1.09000 * 109.47461 * 299.99614 * 9 7 2 26 26 H 1.00900 * 111.00414 * 53.17361 * 12 10 9 27 27 H 1.00902 * 110.99741 * 177.12461 * 12 10 9 28 28 H 1.07993 * 126.90404 * 359.97438 * 15 14 13 29 29 H 1.08000 * 124.92520 * 179.97438 * 16 15 14 30 30 H 1.08000 * 120.00506 * 0.02562 * 19 18 17 31 31 H 1.07999 * 119.66002 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8412 12 7 3.0083 -3.6539 1.2558 13 6 1.4958 -4.9637 -0.1233 14 6 0.7685 -5.4599 0.9578 15 6 0.5192 -4.9933 2.3270 16 6 -0.2696 -5.9141 2.8976 17 8 -0.5342 -6.9021 2.0250 18 6 0.0697 -6.6728 0.8413 19 6 0.1123 -7.3703 -0.3595 20 6 0.8349 -6.8702 -1.4210 21 6 1.5205 -5.6680 -1.3077 22 17 2.4184 -5.0537 -2.6605 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.3913 -3.6397 2.0540 27 1 3.6392 -4.4401 1.3005 28 1 0.8958 -4.0896 2.7829 29 1 -0.6385 -5.8694 3.9116 30 1 -0.4208 -8.3041 -0.4609 31 1 0.8641 -7.4165 -2.3522 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260461121.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:48 Heat of formation + Delta-G solvation = -2.637590 kcal Electronic energy + Delta-G solvation = -17610.013482 eV Core-core repulsion = 14689.549882 eV Total energy + Delta-G solvation = -2920.463600 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.47875 -39.71805 -37.36587 -36.84766 -34.64208 -33.25762 -31.14874 -30.33732 -30.08477 -26.24084 -24.35121 -23.59489 -22.48472 -21.44685 -18.51657 -18.43556 -18.08041 -17.12369 -17.06007 -16.75219 -16.31835 -15.60012 -15.43371 -14.67304 -14.35409 -14.08964 -13.99276 -13.72153 -13.48692 -13.22002 -12.81183 -12.66269 -12.50624 -12.27560 -12.19747 -11.67376 -11.57497 -11.24705 -11.03226 -10.52109 -9.54643 -9.51226 -9.12196 -8.13045 -6.20017 -0.17645 0.10038 1.13267 1.37642 1.41431 1.44492 1.52198 1.80854 2.43565 2.49703 3.19542 3.44850 3.61007 3.84374 3.87549 4.09512 4.21944 4.33331 4.52438 4.55332 4.75748 4.93156 4.98780 5.08852 5.19049 5.35303 5.40757 5.43783 5.66375 5.84416 6.06785 6.25714 6.43729 6.73011 6.92883 7.46496 8.98396 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.006953 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.068231 B = 4026.093367 C = 4937.615088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.060 0.940 9 C 0.054 3.946 10 C 0.140 3.860 11 H 0.080 0.920 12 N -0.824 5.824 13 C -0.074 4.074 14 C -0.136 4.136 15 C -0.234 4.234 16 C 0.030 3.970 17 O -0.195 6.195 18 C 0.036 3.964 19 C -0.094 4.094 20 C -0.083 4.083 21 C -0.064 4.064 22 Cl -0.064 7.064 23 H 0.260 0.740 24 H -0.016 1.016 25 H -0.004 1.004 26 H 0.339 0.661 27 H 0.337 0.663 28 H 0.157 0.843 29 H 0.257 0.743 30 H 0.176 0.824 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -16.763 2.378 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.548 4.548 8 H 0.078 0.922 9 C 0.017 3.983 10 C 0.028 3.972 11 H 0.098 0.902 12 N -0.354 5.354 13 C -0.077 4.077 14 C -0.137 4.137 15 C -0.253 4.253 16 C -0.034 4.034 17 O -0.096 6.096 18 C -0.011 4.011 19 C -0.112 4.112 20 C -0.101 4.101 21 C -0.091 4.091 22 Cl -0.035 7.035 23 H 0.069 0.931 24 H 0.002 0.998 25 H 0.014 0.986 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.174 0.826 29 H 0.273 0.727 30 H 0.193 0.807 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.555 -16.102 2.062 16.243 hybrid contribution -0.112 0.618 -0.004 0.628 sum 0.442 -15.484 2.058 15.626 Atomic orbital electron populations 1.70101 1.07581 1.27399 1.52682 1.25884 0.95667 1.02922 0.95405 0.85571 0.78240 0.78629 0.78981 1.19624 1.21056 1.19375 1.21430 0.93399 0.91324 1.48638 0.92220 1.18832 0.92902 0.92108 0.94479 1.20499 0.93941 0.89107 0.93606 0.90216 1.58896 1.23532 1.49531 1.03460 1.20506 0.97738 0.97777 0.91688 1.19878 1.01502 0.96791 0.95576 1.22751 1.06448 1.03119 0.93015 1.24780 0.97119 0.85349 0.96145 1.84018 1.61457 1.44643 1.19485 1.19992 0.97019 0.95973 0.88139 1.20159 1.01884 1.01684 0.87475 1.21095 0.95377 0.93473 1.00181 1.20816 1.01841 0.97332 0.89124 1.98347 1.73858 1.87783 1.43561 0.93115 0.99801 0.98613 0.84509 0.85090 0.82554 0.72694 0.80712 0.80777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.51 -29.68 8.84 25.60 0.23 -29.45 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.05 2.92 4.47 29.85 0.13 3.05 16 10 C 0.14 6.05 2.75 44.17 0.12 6.17 16 11 H 0.08 3.57 6.33 -2.39 -0.02 3.56 16 12 N -0.82 -31.91 8.82 -171.80 -1.52 -33.43 16 13 C -0.07 -2.77 4.90 -19.68 -0.10 -2.86 16 14 C -0.14 -4.67 5.87 -20.21 -0.12 -4.79 16 15 C -0.23 -7.08 9.65 23.54 0.23 -6.86 16 16 C 0.03 0.68 11.96 66.85 0.80 1.48 16 17 O -0.19 -5.07 10.58 -9.40 -0.10 -5.17 16 18 C 0.04 1.06 7.41 22.98 0.17 1.23 16 19 C -0.09 -2.23 10.06 22.33 0.22 -2.00 16 20 C -0.08 -2.08 9.79 22.32 0.22 -1.87 16 21 C -0.06 -2.09 6.31 22.32 0.14 -1.95 16 22 Cl -0.06 -2.10 27.05 -2.72 -0.07 -2.17 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 25 H 0.00 -0.26 7.83 -2.39 -0.02 -0.27 16 26 H 0.34 12.62 5.64 -89.69 -0.51 12.12 16 27 H 0.34 11.13 9.00 -89.69 -0.81 10.32 16 28 H 0.16 4.85 6.33 -2.91 -0.02 4.83 16 29 H 0.26 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -71.01 281.55 3.00 -68.01 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.13 Total: 20.05 kcal Atomic # 6 Polarization: -40.02 SS G_CDS: 2.51 Total: -37.51 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -1.23 Total: -91.15 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.10 Total: -5.17 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.07 Total: -2.17 kcal Total: -71.01 3.00 -68.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461121.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.368 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds