Wall clock time and date at job start Mon Mar 30 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30595 * 1 3 3 Si 1.86794 * 120.00146 * 2 1 4 4 H 1.48502 * 109.47473 * 274.98384 * 3 2 1 5 5 H 1.48498 * 109.47120 * 34.98739 * 3 2 1 6 6 H 1.48506 * 109.47252 * 154.98930 * 3 2 1 7 7 C 1.40218 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99883 * 186.13194 * 7 2 1 9 9 C 1.41258 * 120.00532 * 6.12062 * 7 2 1 10 10 N 1.30632 * 123.22624 * 174.09091 * 9 7 2 11 11 C 1.47586 * 108.33507 * 180.60940 * 10 9 7 12 12 H 1.08996 * 110.90717 * 256.75643 * 11 10 9 13 13 C 1.53000 * 110.89850 * 133.19699 * 11 10 9 14 14 C 1.50696 * 109.47396 * 66.45512 * 13 11 10 15 15 C 1.38240 * 119.98624 * 269.72346 * 14 13 11 16 16 C 1.38218 * 120.01577 * 179.72635 * 15 14 13 17 17 C 1.38356 * 119.98293 * 0.54531 * 16 15 14 18 18 Cl 1.73595 * 120.01075 * 179.74940 * 17 16 15 19 19 C 1.38352 * 119.97301 * 359.72833 * 17 16 15 20 20 C 1.38215 * 119.98839 * 359.97438 * 19 17 16 21 21 C 1.54784 * 102.10987 * 14.99488 * 11 10 9 22 22 O 1.35194 * 123.22126 * 354.07892 * 9 7 2 23 23 H 0.97001 * 119.99981 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46734 * 186.45497 * 13 11 10 25 25 H 1.08995 * 109.47494 * 306.45214 * 13 11 10 26 26 H 1.08002 * 119.99593 * 0.02562 * 15 14 13 27 27 H 1.07993 * 120.01142 * 180.27612 * 16 15 14 28 28 H 1.08000 * 120.00468 * 180.02562 * 19 17 16 29 29 H 1.08003 * 119.99559 * 180.02562 * 20 19 17 30 30 H 1.09003 * 111.01707 * 94.38101 * 21 11 10 31 31 H 1.08988 * 111.01797 * 218.27230 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.3822 2.1072 -1.3948 5 1 1.4941 2.6199 0.8028 6 1 3.5863 1.4119 0.5920 7 6 2.0069 -1.2144 -0.0005 8 1 3.0824 -1.2172 0.0994 9 6 1.3067 -2.4342 -0.1315 10 7 1.9009 -3.5913 -0.2520 11 6 0.8646 -4.6342 -0.3803 12 1 0.7453 -5.1811 0.5550 13 6 1.1909 -5.5893 -1.5302 14 6 2.4357 -6.3704 -1.1968 15 6 3.6762 -5.8830 -1.5634 16 6 4.8187 -6.5962 -1.2528 17 6 4.7198 -7.8038 -0.5848 18 17 6.1538 -8.7033 -0.2002 19 6 3.4776 -8.2939 -0.2232 20 6 2.3362 -7.5767 -0.5289 21 6 -0.3992 -3.7989 -0.6977 22 8 -0.0427 -2.5160 -0.1439 23 1 -0.4850 0.8401 0.0004 24 1 0.3586 -6.2776 -1.6781 25 1 1.3550 -5.0164 -2.4429 26 1 3.7531 -4.9422 -2.0883 27 1 5.7881 -6.2131 -1.5353 28 1 3.3998 -9.2362 0.2986 29 1 1.3665 -7.9590 -0.2463 30 1 -0.5616 -3.7289 -1.7733 31 1 -1.2757 -4.2107 -0.1976 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260476395.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:19 Heat of formation + Delta-G solvation = -31.282504 kcal Electronic energy + Delta-G solvation = -17005.191645 eV Core-core repulsion = 14083.485908 eV Total energy + Delta-G solvation = -2921.705737 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23056 -40.11956 -37.47017 -35.60786 -34.83289 -32.61565 -31.92743 -30.97735 -28.08465 -26.67199 -23.71293 -22.98053 -22.23134 -21.06784 -19.22643 -17.97733 -17.20095 -17.01163 -16.30644 -16.13279 -15.93443 -15.45397 -14.63054 -14.49405 -14.41768 -14.25070 -13.66366 -13.22874 -13.11034 -13.04821 -12.66156 -12.62156 -12.35262 -12.16120 -12.12769 -11.81234 -11.70005 -11.63603 -11.06254 -10.10079 -9.90005 -9.56527 -9.34482 -8.66846 -6.78072 0.25531 0.43252 1.18408 1.32959 1.42721 1.58755 2.02683 2.23403 2.73676 3.18431 3.34897 3.77446 3.87765 4.02438 4.16191 4.29751 4.36803 4.46035 4.47439 4.52292 4.67909 4.78765 4.85186 5.07013 5.19928 5.21619 5.30068 5.31102 5.37098 5.77976 5.84695 5.95817 6.25484 6.65592 6.84685 7.97227 8.36256 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027207 B = 0.004455 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.906949 B = 6283.723027 C = 7104.874069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.039 3.961 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.486 4.486 8 H 0.095 0.905 9 C 0.386 3.614 10 N -0.701 5.701 11 C 0.049 3.951 12 H 0.051 0.949 13 C -0.053 4.053 14 C -0.064 4.064 15 C -0.092 4.092 16 C -0.119 4.119 17 C -0.051 4.051 18 Cl -0.074 7.074 19 C -0.114 4.114 20 C -0.112 4.112 21 C 0.009 3.991 22 O -0.344 6.344 23 H 0.291 0.709 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.138 0.862 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.065 0.935 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 -11.069 -2.709 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.181 4.181 3 Si 0.820 3.180 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.524 4.524 8 H 0.113 0.887 9 C 0.187 3.813 10 N -0.453 5.453 11 C -0.063 4.063 12 H 0.069 0.931 13 C -0.091 4.091 14 C -0.064 4.064 15 C -0.110 4.110 16 C -0.138 4.138 17 C -0.078 4.078 18 Cl -0.045 7.045 19 C -0.132 4.132 20 C -0.130 4.130 21 C -0.068 4.068 22 O -0.249 6.249 23 H 0.101 0.899 24 H 0.116 0.884 25 H 0.076 0.924 26 H 0.133 0.867 27 H 0.155 0.845 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.083 0.917 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.836 -11.349 -2.634 12.266 hybrid contribution -0.488 0.733 0.067 0.883 sum 3.349 -10.616 -2.566 11.424 Atomic orbital electron populations 1.69816 1.09074 1.30890 1.33779 1.27004 0.95715 1.04996 0.90389 0.84923 0.78828 0.74716 0.79580 1.18365 1.18750 1.18068 1.19152 0.94986 0.87827 1.50399 0.88729 1.22274 0.78900 0.94683 0.85400 1.75570 1.26164 0.97228 1.46356 1.23063 0.90153 0.96060 0.97001 0.93086 1.20504 0.95394 0.96394 0.96832 1.19962 0.95126 0.94437 0.96886 1.21015 0.91976 0.98485 0.99569 1.21140 0.99602 0.93772 0.99290 1.20972 0.88252 0.94926 1.03643 1.98337 1.38520 1.74490 1.93182 1.21209 0.90150 1.01318 1.00546 1.21236 0.99399 0.94071 0.98339 1.24532 0.99690 0.83814 0.98791 1.87298 1.23768 1.36161 1.77692 0.89881 0.88409 0.92357 0.86670 0.84461 0.83009 0.83150 0.91724 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.88 11.84 21.87 0.26 -42.62 16 2 C 0.04 1.96 5.49 85.36 0.47 2.43 16 3 Si 1.00 38.00 29.56 68.60 2.03 40.02 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 5 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 7 C -0.49 -27.14 9.46 23.49 0.22 -26.92 16 8 H 0.09 5.20 7.86 -2.90 -0.02 5.17 16 9 C 0.39 21.77 7.37 85.61 0.63 22.40 16 10 N -0.70 -36.48 11.08 -435.96 -4.83 -41.31 16 11 C 0.05 2.05 3.74 45.39 0.17 2.22 16 12 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 13 C -0.05 -1.78 5.03 29.85 0.15 -1.63 16 14 C -0.06 -2.07 4.99 -19.86 -0.10 -2.17 16 15 C -0.09 -3.13 9.46 22.27 0.21 -2.92 16 16 C -0.12 -3.60 9.83 22.29 0.22 -3.38 16 17 C -0.05 -1.42 6.32 22.33 0.14 -1.28 16 18 Cl -0.07 -1.78 28.96 -2.72 -0.08 -1.86 16 19 C -0.11 -2.88 9.83 22.29 0.22 -2.67 16 20 C -0.11 -3.03 9.70 22.27 0.22 -2.81 16 21 C 0.01 0.39 7.71 72.59 0.56 0.95 16 22 O -0.34 -18.82 9.22 -84.74 -0.78 -19.60 16 23 H 0.29 13.72 8.29 -92.71 -0.77 12.96 16 24 H 0.10 2.53 8.09 -2.38 -0.02 2.51 16 25 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 26 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 27 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 29 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.06 2.56 7.92 -2.39 -0.02 2.55 16 31 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 Total: -1.00 -63.09 289.66 0.84 -62.25 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 1.14 Total: 18.91 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 3.11 Total: -15.78 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -4.57 Total: -83.93 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.78 Total: -19.60 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.08 Total: -1.86 kcal Total: -63.09 0.84 -62.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260476395.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.964 kcal (2) G-P(sol) polarization free energy of solvation -63.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds