Wall clock time and date at job start Mon Mar 30 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30594 * 1 3 3 Si 1.86803 * 119.99984 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00027 * 3 2 1 5 5 H 1.48501 * 109.47062 * 29.99978 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99777 * 3 2 1 7 7 C 1.40225 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.41251 * 119.99672 * 0.27842 * 7 2 1 10 10 N 1.30633 * 123.22457 * 179.44914 * 9 7 2 11 11 C 1.47589 * 108.34081 * 179.22373 * 10 9 7 12 12 H 1.08990 * 110.69395 * 103.52571 * 11 10 9 13 13 C 1.52998 * 111.09341 * 227.07619 * 11 10 9 14 14 C 1.50696 * 109.47099 * 287.89092 * 13 11 10 15 15 C 1.38246 * 119.98762 * 269.72905 * 14 13 11 16 16 C 1.38213 * 120.01060 * 179.72236 * 15 14 13 17 17 C 1.38351 * 119.98962 * 0.55155 * 16 15 14 18 18 Cl 1.73596 * 120.01401 * 179.70204 * 17 16 15 19 19 C 1.38353 * 119.97040 * 359.72118 * 17 16 15 20 20 C 1.38215 * 119.98765 * 0.02562 * 19 17 16 21 21 C 1.54792 * 102.15674 * 345.38962 * 11 10 9 22 22 O 1.35192 * 123.22880 * 359.75181 * 9 7 2 23 23 H 0.96996 * 120.00284 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47477 * 47.89433 * 13 11 10 25 25 H 1.09005 * 109.46706 * 167.89321 * 13 11 10 26 26 H 1.08003 * 119.99281 * 0.02562 * 15 14 13 27 27 H 1.08004 * 120.00572 * 180.27533 * 16 15 14 28 28 H 1.07998 * 120.00602 * 179.97438 * 19 17 16 29 29 H 1.08001 * 119.99220 * 180.02562 * 20 19 17 30 30 H 1.08997 * 111.01991 * 265.39085 * 21 11 10 31 31 H 1.09004 * 111.04608 * 141.52575 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.4874 2.0465 -1.4001 5 1 1.4374 2.6527 0.7000 6 1 3.5375 1.4402 0.7001 7 6 2.0071 -1.2144 0.0005 8 1 3.0871 -1.2143 0.0001 9 6 1.3008 -2.4376 -0.0049 10 7 1.8893 -3.6038 -0.0152 11 6 0.8479 -4.6496 0.0010 12 1 0.7291 -5.0901 -0.9888 13 6 1.1651 -5.7265 1.0405 14 6 2.3207 -6.5650 0.5585 15 6 2.0843 -7.6986 -0.1967 16 6 3.1441 -8.4649 -0.6438 17 6 4.4412 -8.1037 -0.3259 18 17 5.7724 -9.0700 -0.8807 19 6 4.6769 -6.9723 0.4347 20 6 3.6166 -6.2039 0.8769 21 6 -0.4133 -3.8476 0.4037 22 8 -0.0490 -2.5137 -0.0058 23 1 -0.4850 0.8400 -0.0004 24 1 1.4295 -5.2524 1.9857 25 1 0.2907 -6.3612 1.1844 26 1 1.0714 -7.9827 -0.4415 27 1 2.9594 -9.3479 -1.2376 28 1 5.6892 -6.6901 0.6836 29 1 3.8005 -5.3204 1.4703 30 1 -0.5793 -3.8946 1.4799 31 1 -1.2903 -4.1979 -0.1406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260476397.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:21 Heat of formation + Delta-G solvation = -31.571161 kcal Electronic energy + Delta-G solvation = -16965.571605 eV Core-core repulsion = 14043.853351 eV Total energy + Delta-G solvation = -2921.718254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23127 -40.13671 -37.47856 -35.60925 -34.83439 -32.63351 -31.94107 -30.97768 -28.08301 -26.67762 -23.72232 -22.98895 -22.22821 -21.08842 -19.22039 -17.99500 -17.18752 -17.01746 -16.32600 -16.12311 -15.93436 -15.47275 -14.64213 -14.51238 -14.42062 -14.25229 -13.62327 -13.19897 -13.09450 -13.07448 -12.70086 -12.62166 -12.38182 -12.16639 -12.13798 -11.81303 -11.70195 -11.64395 -11.06130 -10.10870 -9.91923 -9.57181 -9.36083 -8.66292 -6.78368 0.23790 0.41669 1.17536 1.33633 1.42852 1.58465 2.02473 2.23329 2.72147 3.15875 3.38265 3.76774 3.87175 4.01455 4.14415 4.29287 4.36353 4.45021 4.47190 4.52137 4.67291 4.78177 4.84340 5.05957 5.19768 5.21630 5.29148 5.30669 5.36279 5.76560 5.83937 5.94471 6.25440 6.65520 6.84321 7.96870 8.36564 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028828 B = 0.004297 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.053440 B = 6515.156952 C = 7278.866433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.038 3.962 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.486 4.486 8 H 0.095 0.905 9 C 0.386 3.614 10 N -0.703 5.703 11 C 0.050 3.950 12 H 0.050 0.950 13 C -0.053 4.053 14 C -0.066 4.066 15 C -0.112 4.112 16 C -0.113 4.113 17 C -0.051 4.051 18 Cl -0.073 7.073 19 C -0.119 4.119 20 C -0.095 4.095 21 C 0.009 3.991 22 O -0.343 6.343 23 H 0.291 0.709 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.138 0.862 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -11.618 1.111 12.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.182 4.182 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.524 4.524 8 H 0.113 0.887 9 C 0.188 3.812 10 N -0.455 5.455 11 C -0.062 4.062 12 H 0.068 0.932 13 C -0.091 4.091 14 C -0.067 4.067 15 C -0.130 4.130 16 C -0.132 4.132 17 C -0.078 4.078 18 Cl -0.045 7.045 19 C -0.137 4.137 20 C -0.113 4.113 21 C -0.068 4.068 22 O -0.249 6.249 23 H 0.101 0.899 24 H 0.076 0.924 25 H 0.116 0.884 26 H 0.169 0.831 27 H 0.170 0.830 28 H 0.156 0.844 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.427 -11.902 0.995 12.425 hybrid contribution -0.469 0.715 -0.062 0.858 sum 2.957 -11.186 0.934 11.608 Atomic orbital electron populations 1.69801 1.09066 1.30905 1.33827 1.27011 0.95737 1.05015 0.90388 0.84935 0.78792 0.74635 0.79681 1.18479 1.18683 1.17965 1.19154 0.94653 0.87738 1.50836 0.88652 1.22265 0.78958 0.94889 0.85101 1.75555 1.26211 0.96882 1.46880 1.23057 0.90147 0.95764 0.97198 0.93211 1.20502 0.96415 0.95041 0.97163 1.19992 0.94850 0.94765 0.97059 1.21247 1.00131 0.94130 0.97471 1.21221 0.90110 1.01239 1.00594 1.20982 0.89334 0.95350 1.02110 1.98339 1.46889 1.70658 1.88581 1.21147 1.00228 0.94042 0.98318 1.21043 0.92266 0.98212 0.99797 1.24549 0.99635 0.82603 1.00048 1.87291 1.23604 1.31559 1.82416 0.89873 0.92363 0.88446 0.83086 0.82953 0.84382 0.86564 0.91619 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.95 11.82 21.87 0.26 -42.69 16 2 C 0.04 1.94 5.50 85.36 0.47 2.41 16 3 Si 1.00 37.98 29.56 68.60 2.03 40.01 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.49 -27.16 9.47 23.49 0.22 -26.93 16 8 H 0.10 5.22 7.85 -2.91 -0.02 5.20 16 9 C 0.39 21.83 7.37 85.61 0.63 22.46 16 10 N -0.70 -36.74 11.40 -435.96 -4.97 -41.71 16 11 C 0.05 2.10 3.68 45.39 0.17 2.27 16 12 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 13 C -0.05 -1.79 5.01 29.85 0.15 -1.64 16 14 C -0.07 -2.14 5.06 -19.86 -0.10 -2.24 16 15 C -0.11 -2.96 9.70 22.27 0.22 -2.75 16 16 C -0.11 -2.82 9.83 22.29 0.22 -2.60 16 17 C -0.05 -1.39 6.32 22.32 0.14 -1.25 16 18 Cl -0.07 -1.74 28.96 -2.72 -0.08 -1.82 16 19 C -0.12 -3.51 9.83 22.29 0.22 -3.29 16 20 C -0.09 -3.19 9.68 22.26 0.22 -2.97 16 21 C 0.01 0.39 7.70 72.59 0.56 0.95 16 22 O -0.34 -18.82 9.19 -84.72 -0.78 -19.60 16 23 H 0.29 13.75 8.29 -92.71 -0.77 12.98 16 24 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 25 H 0.10 2.54 8.08 -2.38 -0.02 2.52 16 26 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 27 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 28 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.07 2.60 7.92 -2.39 -0.02 2.58 16 31 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 Total: -1.00 -63.21 290.16 0.71 -62.51 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.14 Total: 18.89 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 3.11 Total: -15.58 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -4.71 Total: -84.40 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.78 Total: -19.60 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -63.21 0.71 -62.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260476397.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.937 kcal (2) G-P(sol) polarization free energy of solvation -63.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds