Wall clock time and date at job start Mon Mar 30 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47006 * 299.99056 * 3 2 1 6 6 H 1.48500 * 109.47660 * 59.99691 * 3 2 1 7 7 C 1.37881 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46886 * 179.97438 * 9 7 2 11 11 N 1.28634 * 122.94079 * 0.02562 * 10 9 7 12 12 C 1.47601 * 108.55144 * 179.58896 * 11 10 9 13 13 H 1.08994 * 110.97817 * 103.20698 * 12 11 10 14 14 C 1.50700 * 110.94755 * 226.89821 * 12 11 10 15 15 C 1.38259 * 119.99465 * 212.50645 * 14 12 11 16 16 C 1.38218 * 120.02873 * 179.97438 * 15 14 12 17 17 C 1.38235 * 120.01174 * 0.02562 * 16 15 14 18 18 C 1.38333 * 119.98951 * 0.02562 * 17 16 15 19 19 Cl 1.73592 * 120.01348 * 180.02562 * 18 17 16 20 20 C 1.38198 * 119.99251 * 32.22806 * 14 12 11 21 21 C 1.54857 * 101.89139 * 345.04642 * 12 11 10 22 22 O 1.34592 * 122.93697 * 179.97438 * 10 9 7 23 23 H 0.97003 * 119.99602 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47007 * 59.99565 * 9 7 2 25 25 H 1.08998 * 109.46925 * 299.99451 * 9 7 2 26 26 H 1.07998 * 119.98940 * 359.97438 * 15 14 12 27 27 H 1.08003 * 119.99482 * 180.02562 * 16 15 14 28 28 H 1.08004 * 120.00629 * 180.02562 * 17 16 15 29 29 H 1.07997 * 120.00451 * 0.02562 * 20 14 12 30 30 H 1.08992 * 111.07494 * 141.22459 * 21 12 11 31 31 H 1.09000 * 111.07496 * 265.25999 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 7 3.5052 -3.4748 0.0010 12 6 4.1555 -4.7999 0.0109 13 1 4.5374 -5.0545 -0.9777 14 6 5.2548 -4.8529 1.0403 15 6 6.3757 -5.6303 0.8150 16 6 7.3847 -5.6790 1.7585 17 6 7.2733 -4.9508 2.9282 18 6 6.1516 -4.1736 3.1546 19 17 6.0114 -3.2583 4.6230 20 6 5.1450 -4.1199 2.2067 21 6 2.9812 -5.7286 0.4067 22 8 1.8471 -4.9349 0.0010 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 6.4630 -6.1998 -0.0984 27 1 8.2602 -6.2862 1.5818 28 1 8.0620 -4.9886 3.6651 29 1 4.2712 -3.5094 2.3807 30 1 3.0208 -6.6675 -0.1454 31 1 2.9688 -5.9082 1.4818 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260476462.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:02 Heat of formation + Delta-G solvation = 3.629238 kcal Electronic energy + Delta-G solvation = -17098.243684 eV Core-core repulsion = 14178.051834 eV Total energy + Delta-G solvation = -2920.191850 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.84938 -39.04039 -36.42308 -33.73686 -33.45962 -31.55416 -30.73372 -29.48306 -27.28654 -23.85849 -23.48051 -22.61647 -20.89876 -19.49930 -17.23397 -16.60429 -16.02895 -15.75354 -15.26631 -15.12615 -14.62091 -14.20264 -13.69354 -13.63790 -13.09295 -12.48237 -12.43834 -12.30785 -11.76999 -11.50359 -11.36015 -11.25920 -11.11201 -10.76522 -10.72196 -10.64606 -9.97255 -9.64686 -9.05833 -8.92122 -8.73331 -8.55198 -8.30227 -6.06309 -4.06250 1.11376 1.26168 2.17151 2.90667 3.34251 3.41584 3.49196 3.55916 3.88134 4.49063 4.65072 4.72845 4.80055 5.02442 5.05899 5.18051 5.26350 5.32614 5.40419 5.54117 5.64541 5.81222 5.93387 6.22704 6.24624 6.41196 6.54042 6.78188 7.07651 7.25435 7.31622 7.98497 8.12726 8.62901 9.06425 9.58287 11.05994 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.006124 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.512901 B = 4570.843376 C = 5609.060287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.083 0.917 9 C 0.082 3.918 10 C 0.329 3.671 11 N -0.528 5.528 12 C 0.052 3.948 13 H 0.099 0.901 14 C -0.050 4.050 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.035 4.035 19 Cl -0.072 7.072 20 C -0.080 4.080 21 C 0.026 3.974 22 O -0.353 6.353 23 H 0.262 0.738 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.103 0.897 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.990 -12.798 4.388 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.101 0.899 9 C 0.045 3.955 10 C 0.106 3.894 11 N -0.264 5.264 12 C -0.058 4.058 13 H 0.116 0.884 14 C -0.050 4.050 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.135 4.135 18 C -0.061 4.061 19 Cl -0.044 7.044 20 C -0.099 4.099 21 C -0.051 4.051 22 O -0.257 6.257 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.121 0.879 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.301 -12.104 4.458 17.824 hybrid contribution 0.201 0.201 0.138 0.316 sum 12.502 -11.902 4.596 17.863 Atomic orbital electron populations 1.69969 1.06058 1.26913 1.50984 1.24993 0.94871 0.99461 0.95214 0.86380 0.80337 0.83022 0.77437 1.19409 1.21062 1.21066 1.21208 0.94551 0.88516 1.50333 0.89900 1.18255 0.91332 0.86053 0.99890 1.27102 0.93344 0.84151 0.84807 1.75159 1.05406 1.18518 1.27362 1.22519 0.94331 0.91404 0.97548 0.88360 1.19503 0.95181 0.96226 0.94131 1.21086 0.93238 0.99065 0.99598 1.20995 0.99022 0.99561 0.93440 1.21015 0.96818 0.97263 0.98436 1.20935 0.97205 0.98270 0.89700 1.98370 1.97993 1.73209 1.34782 1.21054 0.98843 0.98031 0.91957 1.24508 0.84112 0.95522 1.00997 1.87013 1.38259 1.18160 1.82304 0.92867 0.92840 0.92773 0.85501 0.85207 0.85226 0.84206 0.87925 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.07 8.95 -34.44 -0.31 -14.38 16 8 H 0.08 2.34 6.77 -52.49 -0.36 1.99 16 9 C 0.08 2.07 5.60 -29.03 -0.16 1.91 16 10 C 0.33 7.26 7.68 -13.62 -0.10 7.15 16 11 N -0.53 -11.27 8.94 -51.72 -0.46 -11.74 16 12 C 0.05 0.85 3.98 -67.50 -0.27 0.58 16 13 H 0.10 1.46 8.09 -51.93 -0.42 1.04 16 14 C -0.05 -0.73 5.00 -104.63 -0.52 -1.26 16 15 C -0.11 -1.30 9.70 -39.58 -0.38 -1.69 16 16 C -0.11 -1.17 10.05 -39.59 -0.40 -1.57 16 17 C -0.12 -1.36 9.83 -39.55 -0.39 -1.74 16 18 C -0.03 -0.49 6.32 -39.50 -0.25 -0.74 16 19 Cl -0.07 -1.00 28.96 -51.86 -1.50 -2.51 16 20 C -0.08 -1.29 9.14 -39.55 -0.36 -1.65 16 21 C 0.03 0.38 7.73 38.14 0.29 0.68 16 22 O -0.35 -6.85 11.17 -15.55 -0.17 -7.02 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 25 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 27 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.14 2.59 7.54 -52.49 -0.40 2.19 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 LS Contribution 289.86 15.07 4.37 4.37 Total: -1.00 -29.85 289.86 -8.26 -38.10 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -3.25 Total: -1.40 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.95 Total: -11.24 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.27 Total: -37.11 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.17 Total: -7.02 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.85 -8.26 -38.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260476462.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.733 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds