Wall clock time and date at job start Mon Mar 30 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47006 * 299.99056 * 3 2 1 6 6 H 1.48500 * 109.47660 * 59.99691 * 3 2 1 7 7 C 1.37881 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46886 * 179.97438 * 9 7 2 11 11 N 1.28634 * 122.94079 * 0.02562 * 10 9 7 12 12 C 1.47601 * 108.55144 * 179.58896 * 11 10 9 13 13 H 1.08994 * 110.97817 * 103.20698 * 12 11 10 14 14 C 1.50700 * 110.94755 * 226.89821 * 12 11 10 15 15 C 1.38259 * 119.99465 * 212.50645 * 14 12 11 16 16 C 1.38218 * 120.02873 * 179.97438 * 15 14 12 17 17 C 1.38235 * 120.01174 * 0.02562 * 16 15 14 18 18 C 1.38333 * 119.98951 * 0.02562 * 17 16 15 19 19 Cl 1.73592 * 120.01348 * 180.02562 * 18 17 16 20 20 C 1.38198 * 119.99251 * 32.22806 * 14 12 11 21 21 C 1.54857 * 101.89139 * 345.04642 * 12 11 10 22 22 O 1.34592 * 122.93697 * 179.97438 * 10 9 7 23 23 H 0.97003 * 119.99602 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47007 * 59.99565 * 9 7 2 25 25 H 1.08998 * 109.46925 * 299.99451 * 9 7 2 26 26 H 1.07998 * 119.98940 * 359.97438 * 15 14 12 27 27 H 1.08003 * 119.99482 * 180.02562 * 16 15 14 28 28 H 1.08004 * 120.00629 * 180.02562 * 17 16 15 29 29 H 1.07997 * 120.00451 * 0.02562 * 20 14 12 30 30 H 1.08992 * 111.07494 * 141.22459 * 21 12 11 31 31 H 1.09000 * 111.07496 * 265.25999 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 7 3.5052 -3.4748 0.0010 12 6 4.1555 -4.7999 0.0109 13 1 4.5374 -5.0545 -0.9777 14 6 5.2548 -4.8529 1.0403 15 6 6.3757 -5.6303 0.8150 16 6 7.3847 -5.6790 1.7585 17 6 7.2733 -4.9508 2.9282 18 6 6.1516 -4.1736 3.1546 19 17 6.0114 -3.2583 4.6230 20 6 5.1450 -4.1199 2.2067 21 6 2.9812 -5.7286 0.4067 22 8 1.8471 -4.9349 0.0010 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 6.4630 -6.1998 -0.0984 27 1 8.2602 -6.2862 1.5818 28 1 8.0620 -4.9886 3.6651 29 1 4.2712 -3.5094 2.3807 30 1 3.0208 -6.6675 -0.1454 31 1 2.9688 -5.9082 1.4818 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260476462.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:02 Heat of formation + Delta-G solvation = -15.773346 kcal Electronic energy + Delta-G solvation = -17099.085043 eV Core-core repulsion = 14178.051834 eV Total energy + Delta-G solvation = -2921.033209 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.27367 -40.09623 -37.48400 -35.60382 -34.93802 -33.20925 -31.72198 -30.96037 -28.87896 -25.58932 -24.94019 -23.60865 -22.04578 -21.17429 -18.41194 -18.30401 -17.74541 -17.04873 -16.49950 -16.39366 -16.25352 -15.66789 -14.81454 -14.65541 -14.39573 -14.30930 -14.11615 -13.56233 -13.44717 -12.88102 -12.71006 -12.54320 -12.42962 -12.40162 -12.30735 -11.95526 -11.79848 -11.52405 -10.85807 -10.63845 -10.12060 -9.83917 -9.63915 -8.22520 -6.28906 0.13414 0.25901 1.12912 1.26106 1.41375 1.42420 1.56708 2.32380 2.53402 2.59242 3.13829 3.39650 3.51586 3.75547 3.89679 4.00246 4.15164 4.28504 4.39140 4.46416 4.56938 4.70433 4.87328 4.97425 5.13357 5.22917 5.26752 5.33675 5.36205 5.55821 5.80589 5.83312 6.06505 6.83072 7.02653 7.39181 8.90685 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.006124 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.512901 B = 4570.843376 C = 5609.060287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.087 3.913 10 C 0.319 3.681 11 N -0.549 5.549 12 C 0.051 3.949 13 H 0.119 0.881 14 C -0.066 4.066 15 C -0.102 4.102 16 C -0.098 4.098 17 C -0.112 4.112 18 C -0.049 4.049 19 Cl -0.081 7.081 20 C -0.109 4.109 21 C 0.027 3.973 22 O -0.364 6.364 23 H 0.266 0.734 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.160 0.840 27 H 0.173 0.827 28 H 0.155 0.845 29 H 0.101 0.899 30 H 0.146 0.854 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.809 -14.403 4.009 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.092 0.908 9 C 0.049 3.951 10 C 0.094 3.906 11 N -0.285 5.285 12 C -0.059 4.059 13 H 0.136 0.864 14 C -0.067 4.067 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.130 4.130 18 C -0.075 4.075 19 Cl -0.052 7.052 20 C -0.128 4.128 21 C -0.049 4.049 22 O -0.269 6.269 23 H 0.075 0.925 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.178 0.822 27 H 0.191 0.809 28 H 0.173 0.827 29 H 0.119 0.881 30 H 0.164 0.836 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.122 -13.727 4.082 20.827 hybrid contribution -0.575 0.587 0.278 0.868 sum 14.547 -13.140 4.359 20.081 Atomic orbital electron populations 1.70065 1.07352 1.27946 1.51691 1.25799 0.95711 1.02769 0.94807 0.85398 0.78806 0.78982 0.77877 1.19508 1.20017 1.20330 1.21394 0.94246 0.89874 1.50241 0.90849 1.17897 0.91674 0.87235 0.98285 1.26286 0.93020 0.84565 0.86713 1.75026 1.05367 1.22533 1.25594 1.22672 0.94939 0.89001 0.99239 0.86369 1.19478 0.96173 0.97752 0.93303 1.21438 0.91766 0.97843 1.00961 1.21500 0.99657 0.98440 0.91933 1.21399 0.96099 0.95982 0.99523 1.21071 0.97924 0.99271 0.89274 1.98360 1.98089 1.73623 1.35147 1.20851 0.98670 0.99397 0.93867 1.24834 0.81963 0.96098 1.02032 1.86964 1.40268 1.17245 1.82391 0.92516 0.94513 0.94629 0.82236 0.80919 0.82706 0.88126 0.83609 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.52 -29.85 8.95 25.60 0.23 -29.62 16 8 H 0.07 4.29 6.77 -2.91 -0.02 4.27 16 9 C 0.09 4.62 5.60 29.10 0.16 4.78 16 10 C 0.32 14.55 7.68 88.58 0.68 15.23 16 11 N -0.55 -23.87 8.94 -432.79 -3.87 -27.74 16 12 C 0.05 1.59 3.98 44.67 0.18 1.77 16 13 H 0.12 3.19 8.09 -2.39 -0.02 3.17 16 14 C -0.07 -1.86 5.00 -19.87 -0.10 -1.96 16 15 C -0.10 -1.96 9.70 22.27 0.22 -1.74 16 16 C -0.10 -1.57 10.05 22.26 0.22 -1.34 16 17 C -0.11 -2.23 9.83 22.29 0.22 -2.01 16 18 C -0.05 -1.35 6.32 22.33 0.14 -1.20 16 19 Cl -0.08 -2.25 28.96 -2.72 -0.08 -2.33 16 20 C -0.11 -3.53 9.14 22.29 0.20 -3.32 16 21 C 0.03 0.75 7.73 72.62 0.56 1.32 16 22 O -0.36 -14.25 11.17 -78.57 -0.88 -15.13 16 23 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 24 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 27 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.10 4.00 7.54 -2.91 -0.02 3.98 16 30 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.08 2.23 7.91 -2.39 -0.02 2.21 16 Total: -1.00 -67.40 289.86 1.80 -65.60 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.14 Total: 4.39 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 3.18 Total: -17.23 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -3.58 Total: -82.79 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.88 Total: -15.13 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.08 Total: -2.33 kcal Total: -67.40 1.80 -65.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260476462.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.822 kcal (2) G-P(sol) polarization free energy of solvation -67.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds