Wall clock time and date at job start Mon Mar 30 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47386 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47141 * 300.00430 * 3 2 1 6 6 H 1.48499 * 109.46998 * 59.99975 * 3 2 1 7 7 C 1.37879 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00318 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00079 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47281 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.82118 * 308.67016 * 10 9 7 12 12 C 1.54818 * 110.92412 * 184.99906 * 10 9 7 13 13 O 1.44244 * 101.35885 * 218.30107 * 12 10 9 14 14 C 1.34941 * 107.69094 * 24.86887 * 13 12 10 15 15 C 1.47942 * 123.08570 * 162.71021 * 14 13 12 16 16 C 1.39529 * 120.14596 * 0.27738 * 15 14 13 17 17 C 1.37943 * 119.87028 * 180.23411 * 16 15 14 18 18 C 1.38395 * 120.17299 * 359.78554 * 17 16 15 19 19 C 1.38273 * 120.29380 * 359.96279 * 18 17 16 20 20 C 1.38160 * 120.12586 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.08435 * 179.97438 * 20 19 18 22 22 N 1.29653 * 113.82318 * 342.97736 * 14 13 12 23 23 H 0.96997 * 119.99943 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47447 * 60.00054 * 9 7 2 25 25 H 1.08999 * 109.47311 * 300.00257 * 9 7 2 26 26 H 1.08998 * 111.04706 * 100.27940 * 12 10 9 27 27 H 1.08999 * 111.08313 * 336.33339 * 12 10 9 28 28 H 1.08000 * 120.06661 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.90996 * 179.76329 * 17 16 15 30 30 H 1.07998 * 119.84959 * 179.97438 * 18 17 16 31 31 H 1.08005 * 119.93371 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9803 -3.5426 -0.7978 12 6 1.5095 -5.0184 -0.1279 13 8 2.2909 -5.8487 0.7557 14 6 2.8835 -5.0411 1.6599 15 6 3.4545 -5.5351 2.9322 16 6 3.4009 -6.8942 3.2433 17 6 3.9308 -7.3479 4.4334 18 6 4.5187 -6.4594 5.3166 19 6 4.5802 -5.1118 5.0130 20 6 4.0537 -4.6441 3.8244 21 17 4.1309 -2.9519 3.4445 22 7 2.9018 -3.7918 1.3136 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6247 -2.5572 0.8896 26 1 1.5483 -5.3912 -1.1514 27 1 0.4791 -4.9392 0.2188 28 1 2.9419 -7.5890 2.5557 29 1 3.8862 -8.3993 4.6766 30 1 4.9315 -6.8202 6.2471 31 1 5.0408 -4.4236 5.7063 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260476505.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:56 Heat of formation + Delta-G solvation = 11.510671 kcal Electronic energy + Delta-G solvation = -17234.977682 eV Core-core repulsion = 14315.127597 eV Total energy + Delta-G solvation = -2919.850085 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65347 -38.98093 -35.99609 -34.05286 -32.77045 -31.96012 -30.80288 -29.47547 -26.94809 -23.58572 -23.40145 -22.48672 -20.45598 -19.90988 -17.43865 -16.48169 -16.03897 -15.82243 -15.25994 -14.99392 -14.44938 -14.23018 -13.81365 -13.49596 -13.12987 -12.72251 -11.89242 -11.72361 -11.60109 -11.55200 -11.40076 -11.19798 -11.04968 -10.73038 -10.48585 -10.46834 -9.61153 -9.33870 -9.20965 -8.94884 -8.73369 -8.33395 -8.12822 -5.96690 -3.95888 0.80425 1.16413 2.49183 2.78058 3.34464 3.41824 3.47527 3.49324 3.77475 4.43045 4.50856 4.78378 4.81772 5.14079 5.26722 5.32269 5.39170 5.42553 5.51568 5.75393 5.83028 5.94077 6.10761 6.23449 6.28240 6.36540 6.54780 6.68410 6.93794 7.52003 7.68826 8.01040 8.23789 8.44276 9.08106 9.66498 11.15354 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024915 B = 0.006071 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.573200 B = 4610.616617 C = 5520.314641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.498 4.498 8 H 0.059 0.941 9 C 0.042 3.958 10 C 0.024 3.976 11 H 0.093 0.907 12 C 0.021 3.979 13 O -0.354 6.354 14 C 0.285 3.715 15 C -0.019 4.019 16 C -0.076 4.076 17 C -0.128 4.128 18 C -0.097 4.097 19 C -0.121 4.121 20 C -0.004 4.004 21 Cl -0.009 7.009 22 N -0.448 5.448 23 H 0.259 0.741 24 H 0.026 0.974 25 H 0.022 0.978 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.549 -14.660 8.622 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.004 3.996 10 C -0.085 4.085 11 H 0.111 0.889 12 C -0.056 4.056 13 O -0.259 6.259 14 C 0.060 3.940 15 C -0.021 4.021 16 C -0.096 4.096 17 C -0.146 4.146 18 C -0.116 4.116 19 C -0.140 4.140 20 C -0.033 4.033 21 Cl 0.021 6.979 22 N -0.180 5.180 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.643 -13.698 8.706 17.940 hybrid contribution -0.066 0.599 -0.587 0.841 sum 7.577 -13.099 8.119 17.173 Atomic orbital electron populations 1.69961 1.06002 1.26416 1.51665 1.24975 0.94805 0.99161 0.95608 0.86544 0.80240 0.83869 0.77452 1.19722 1.21136 1.21086 1.21100 0.93163 0.90146 1.49221 0.92292 1.19046 0.92471 0.90450 0.97589 1.24071 0.97456 0.95519 0.91451 0.88921 1.24758 0.95720 0.91207 0.93867 1.86855 1.61226 1.36254 1.41615 1.23196 0.94218 0.86635 0.89920 1.17660 1.00848 0.93110 0.90471 1.21276 0.97663 0.93636 0.97050 1.21118 0.99213 1.00171 0.94069 1.21226 0.98311 0.92560 0.99544 1.21038 1.01024 0.96374 0.95557 1.21165 0.99046 0.88195 0.94858 1.98490 1.96099 1.09755 1.93539 1.75607 1.17409 1.13486 1.11476 0.93155 0.95587 0.95947 0.87992 0.90167 0.84371 0.85121 0.85073 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.50 -14.32 9.04 -34.44 -0.31 -14.64 16 8 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 9 C 0.04 1.08 4.63 -27.88 -0.13 0.95 16 10 C 0.02 0.53 3.66 -66.38 -0.24 0.29 16 11 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 12 C 0.02 0.37 7.72 38.12 0.29 0.67 16 13 O -0.35 -6.37 10.68 -16.54 -0.18 -6.54 16 14 C 0.29 5.41 7.57 -14.50 -0.11 5.30 16 15 C -0.02 -0.30 5.88 -104.93 -0.62 -0.92 16 16 C -0.08 -0.95 9.67 -39.21 -0.38 -1.32 16 17 C -0.13 -1.23 10.03 -39.63 -0.40 -1.63 16 18 C -0.10 -0.92 10.04 -39.51 -0.40 -1.32 16 19 C -0.12 -1.42 9.82 -39.60 -0.39 -1.81 16 20 C 0.00 -0.05 6.35 -39.10 -0.25 -0.30 16 21 Cl -0.01 -0.16 25.97 -51.86 -1.35 -1.50 16 22 N -0.45 -9.76 8.31 -51.30 -0.43 -10.19 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 28 H 0.14 1.55 7.77 -52.49 -0.41 1.14 16 29 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 287.44 15.07 4.33 4.33 Total: -1.00 -32.40 287.44 -8.24 -40.65 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -3.32 Total: -4.28 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -3.02 Total: -13.22 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.31 Total: -36.80 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.18 Total: -6.54 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.35 Total: -1.50 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.40 -8.24 -40.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260476505.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.157 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds