Wall clock time and date at job start Mon Mar 30 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47386 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47141 * 300.00430 * 3 2 1 6 6 H 1.48499 * 109.46998 * 59.99975 * 3 2 1 7 7 C 1.37879 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00318 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00079 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47281 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.82118 * 308.67016 * 10 9 7 12 12 C 1.54818 * 110.92412 * 184.99906 * 10 9 7 13 13 O 1.44244 * 101.35885 * 218.30107 * 12 10 9 14 14 C 1.34941 * 107.69094 * 24.86887 * 13 12 10 15 15 C 1.47942 * 123.08570 * 162.71021 * 14 13 12 16 16 C 1.39529 * 120.14596 * 0.27738 * 15 14 13 17 17 C 1.37943 * 119.87028 * 180.23411 * 16 15 14 18 18 C 1.38395 * 120.17299 * 359.78554 * 17 16 15 19 19 C 1.38273 * 120.29380 * 359.96279 * 18 17 16 20 20 C 1.38160 * 120.12586 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.08435 * 179.97438 * 20 19 18 22 22 N 1.29653 * 113.82318 * 342.97736 * 14 13 12 23 23 H 0.96997 * 119.99943 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47447 * 60.00054 * 9 7 2 25 25 H 1.08999 * 109.47311 * 300.00257 * 9 7 2 26 26 H 1.08998 * 111.04706 * 100.27940 * 12 10 9 27 27 H 1.08999 * 111.08313 * 336.33339 * 12 10 9 28 28 H 1.08000 * 120.06661 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.90996 * 179.76329 * 17 16 15 30 30 H 1.07998 * 119.84959 * 179.97438 * 18 17 16 31 31 H 1.08005 * 119.93371 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9803 -3.5426 -0.7978 12 6 1.5095 -5.0184 -0.1279 13 8 2.2909 -5.8487 0.7557 14 6 2.8835 -5.0411 1.6599 15 6 3.4545 -5.5351 2.9322 16 6 3.4009 -6.8942 3.2433 17 6 3.9308 -7.3479 4.4334 18 6 4.5187 -6.4594 5.3166 19 6 4.5802 -5.1118 5.0130 20 6 4.0537 -4.6441 3.8244 21 17 4.1309 -2.9519 3.4445 22 7 2.9018 -3.7918 1.3136 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6247 -2.5572 0.8896 26 1 1.5483 -5.3912 -1.1514 27 1 0.4791 -4.9392 0.2188 28 1 2.9419 -7.5890 2.5557 29 1 3.8862 -8.3993 4.6766 30 1 4.9315 -6.8202 6.2471 31 1 5.0408 -4.4236 5.7063 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260476505.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:55 Heat of formation + Delta-G solvation = -10.448874 kcal Electronic energy + Delta-G solvation = -17235.929919 eV Core-core repulsion = 14315.127597 eV Total energy + Delta-G solvation = -2920.802323 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.11179 -39.98156 -37.20417 -35.94198 -34.42205 -33.48462 -31.80147 -30.93562 -28.76673 -25.32333 -24.69974 -23.57973 -22.01426 -21.33013 -18.76351 -18.31322 -17.65551 -17.06233 -16.58161 -16.37799 -16.05994 -15.53416 -14.80269 -14.65694 -14.57927 -14.47776 -13.66027 -13.55042 -13.14701 -12.97390 -12.77828 -12.46902 -12.45535 -12.32875 -12.29054 -11.98640 -11.66369 -11.23079 -10.65080 -10.54895 -10.45012 -9.76842 -9.48066 -8.21633 -6.28047 -0.25509 0.24716 1.33761 1.34322 1.35399 1.48077 1.49612 2.18114 2.38712 2.74350 3.05441 3.16669 3.72625 3.83915 4.01527 4.04747 4.31615 4.35746 4.36255 4.48676 4.55739 4.63793 4.82740 4.95698 5.18870 5.28178 5.33901 5.37806 5.44242 5.60512 5.75524 5.83000 6.22188 6.77080 6.83080 7.38286 8.90904 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024915 B = 0.006071 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.573200 B = 4610.616617 C = 5520.314641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.280 1.280 7 C -0.512 4.512 8 H 0.049 0.951 9 C 0.053 3.947 10 C 0.024 3.976 11 H 0.087 0.913 12 C 0.030 3.970 13 O -0.347 6.347 14 C 0.299 3.701 15 C -0.059 4.059 16 C -0.074 4.074 17 C -0.113 4.113 18 C -0.076 4.076 19 C -0.124 4.124 20 C -0.023 4.023 21 Cl -0.051 7.051 22 N -0.499 5.499 23 H 0.263 0.737 24 H 0.013 0.987 25 H -0.012 1.012 26 H 0.137 0.863 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.174 0.826 30 H 0.177 0.823 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.835 -16.938 10.249 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.206 1.206 7 C -0.550 4.550 8 H 0.068 0.932 9 C 0.016 3.984 10 C -0.086 4.086 11 H 0.104 0.896 12 C -0.047 4.047 13 O -0.252 6.252 14 C 0.075 3.925 15 C -0.061 4.061 16 C -0.094 4.094 17 C -0.131 4.131 18 C -0.094 4.094 19 C -0.142 4.142 20 C -0.052 4.052 21 Cl -0.022 7.022 22 N -0.231 5.231 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.007 0.993 26 H 0.155 0.845 27 H 0.097 0.903 28 H 0.166 0.834 29 H 0.191 0.809 30 H 0.194 0.806 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.934 -15.996 10.330 21.033 hybrid contribution -0.430 1.104 -0.947 1.517 sum 8.503 -14.893 9.383 19.549 Atomic orbital electron populations 1.70071 1.07434 1.27507 1.52484 1.25817 0.95705 1.02796 0.95175 0.85514 0.78891 0.79465 0.77906 1.19421 1.19762 1.20592 1.21365 0.92894 0.91700 1.49030 0.93247 1.18794 0.92716 0.91802 0.95129 1.23784 0.96723 0.95848 0.92210 0.89555 1.24752 0.95040 0.89177 0.95689 1.86852 1.60984 1.35919 1.41474 1.23826 0.92175 0.86089 0.90442 1.17874 1.03484 0.94972 0.89805 1.21518 0.97496 0.91963 0.98469 1.21628 0.96830 1.02319 0.92295 1.21783 0.95930 0.91053 1.00652 1.21363 1.00410 0.98131 0.94310 1.21400 1.01043 0.86134 0.96594 1.98468 1.96464 1.13272 1.93985 1.75625 1.20445 1.15269 1.11771 0.92843 0.96869 0.99345 0.84519 0.90272 0.83367 0.80875 0.80600 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.29 13.29 21.45 0.28 -58.00 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 46.93 29.54 68.60 2.03 48.96 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.51 -30.65 9.04 25.60 0.23 -30.42 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.05 2.90 4.63 29.85 0.14 3.03 16 10 C 0.02 1.08 3.66 45.40 0.17 1.25 16 11 H 0.09 3.88 8.14 -2.39 -0.02 3.86 16 12 C 0.03 1.06 7.72 72.60 0.56 1.62 16 13 O -0.35 -12.31 10.68 -82.11 -0.88 -13.19 16 14 C 0.30 11.50 7.57 87.59 0.66 12.16 16 15 C -0.06 -1.85 5.88 -20.06 -0.12 -1.97 16 16 C -0.07 -1.64 9.67 22.51 0.22 -1.42 16 17 C -0.11 -1.61 10.03 22.24 0.22 -1.39 16 18 C -0.08 -1.04 10.04 22.32 0.22 -0.82 16 19 C -0.12 -2.57 9.82 22.26 0.22 -2.35 16 20 C -0.02 -0.70 6.35 22.58 0.14 -0.55 16 21 Cl -0.05 -1.95 25.97 -2.72 -0.07 -2.02 16 22 N -0.50 -22.63 8.31 -430.76 -3.58 -26.21 16 23 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 24 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 25 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 27 H 0.08 2.83 7.92 -2.39 -0.02 2.81 16 28 H 0.15 2.89 7.77 -2.91 -0.02 2.87 16 29 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 30 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 31 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -74.29 287.44 2.05 -72.24 By element: Atomic # 1 Polarization: -2.65 SS G_CDS: 1.14 Total: -1.51 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 3.13 Total: -20.27 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -3.29 Total: -84.21 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.88 Total: -13.19 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.07 Total: -2.02 kcal Total: -74.29 2.05 -72.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260476505.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.789 kcal (2) G-P(sol) polarization free energy of solvation -74.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds