Wall clock time and date at job start Mon Mar 30 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99634 * 2 1 4 4 H 1.48499 * 109.47273 * 239.99884 * 3 2 1 5 5 H 1.48499 * 109.47364 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.46971 * 120.00144 * 3 2 1 7 7 C 1.37876 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00193 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47303 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.82326 * 51.32766 * 10 9 7 12 12 C 1.54821 * 110.92409 * 175.00317 * 10 9 7 13 13 O 1.44243 * 101.35968 * 141.70121 * 12 10 9 14 14 C 1.34938 * 107.69037 * 335.12994 * 13 12 10 15 15 C 1.47942 * 123.08666 * 197.26815 * 14 13 12 16 16 C 1.39536 * 120.14509 * 0.02562 * 15 14 13 17 17 C 1.37935 * 119.87098 * 180.02562 * 16 15 14 18 18 C 1.38390 * 120.17454 * 0.02562 * 17 16 15 19 19 C 1.38265 * 120.29846 * 359.97438 * 18 17 16 20 20 C 1.38166 * 120.12124 * 0.02562 * 19 18 17 21 21 Cl 1.73600 * 120.08526 * 179.97438 * 20 19 18 22 22 N 1.29654 * 113.82839 * 17.53727 * 14 13 12 23 23 H 0.97001 * 120.00379 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46984 * 60.00055 * 9 7 2 25 25 H 1.08995 * 109.47218 * 300.00078 * 9 7 2 26 26 H 1.08992 * 111.04794 * 23.67699 * 12 10 9 27 27 H 1.09004 * 111.04394 * 259.72038 * 12 10 9 28 28 H 1.07997 * 120.06629 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.90859 * 180.02562 * 17 16 15 30 30 H 1.07998 * 119.85558 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.94414 * 179.74463 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6619 0.0015 11 1 2.9817 -3.5424 0.7962 12 6 1.5099 -5.0183 0.1286 13 8 2.2900 -5.8486 -0.7562 14 6 2.8812 -5.0410 -1.6612 15 6 3.4507 -5.5349 -2.9341 16 6 3.3916 -6.8933 -3.2479 17 6 3.9248 -7.3478 -4.4360 18 6 4.5183 -6.4604 -5.3166 19 6 4.5808 -5.1130 -5.0129 20 6 4.0506 -4.6444 -3.8262 21 17 4.1301 -2.9525 -3.4456 22 7 2.9093 -3.7931 -1.3103 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6249 -2.5563 0.8919 26 1 0.4792 -4.9386 -0.2168 27 1 1.5503 -5.3911 1.1521 28 1 2.9300 -7.5876 -2.5614 29 1 3.8790 -8.3990 -4.6797 30 1 4.9338 -6.8218 -6.2457 31 1 5.0489 -4.4260 -5.7025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260476507.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:57 Heat of formation + Delta-G solvation = 11.406841 kcal Electronic energy + Delta-G solvation = -17234.610866 eV Core-core repulsion = 14314.756278 eV Total energy + Delta-G solvation = -2919.854588 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65102 -38.98033 -35.99476 -34.04940 -32.77143 -31.95864 -30.80209 -29.47757 -26.94672 -23.58707 -23.39749 -22.48543 -20.46110 -19.90558 -17.43787 -16.47537 -16.03501 -15.82022 -15.26181 -14.99267 -14.45342 -14.23121 -13.81215 -13.49247 -13.12329 -12.71824 -11.89309 -11.72459 -11.59826 -11.55403 -11.40062 -11.19689 -11.02338 -10.73713 -10.51496 -10.45923 -9.60592 -9.33863 -9.22679 -8.95832 -8.73291 -8.32477 -8.12727 -5.96198 -3.95624 0.80533 1.16505 2.49381 2.78272 3.37536 3.41025 3.45041 3.49464 3.77269 4.43095 4.50938 4.78455 4.81835 5.14175 5.26796 5.32324 5.39298 5.42658 5.51643 5.75521 5.83133 5.94277 6.10918 6.23579 6.28398 6.36580 6.54538 6.68402 6.94057 7.51873 7.68789 8.01016 8.23798 8.44416 9.07713 9.66625 11.15724 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.006071 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.788886 B = 4611.048176 C = 5520.522140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.058 0.942 9 C 0.042 3.958 10 C 0.024 3.976 11 H 0.092 0.908 12 C 0.021 3.979 13 O -0.354 6.354 14 C 0.285 3.715 15 C -0.019 4.019 16 C -0.076 4.076 17 C -0.128 4.128 18 C -0.097 4.097 19 C -0.121 4.121 20 C -0.004 4.004 21 Cl -0.009 7.009 22 N -0.448 5.448 23 H 0.260 0.740 24 H 0.022 0.978 25 H 0.026 0.974 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.493 -14.631 -8.625 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.005 3.995 10 C -0.085 4.085 11 H 0.110 0.890 12 C -0.055 4.055 13 O -0.259 6.259 14 C 0.060 3.940 15 C -0.021 4.021 16 C -0.096 4.096 17 C -0.146 4.146 18 C -0.116 4.116 19 C -0.140 4.140 20 C -0.033 4.033 21 Cl 0.021 6.979 22 N -0.180 5.180 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.098 0.902 27 H 0.120 0.880 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.590 -13.666 -8.703 17.892 hybrid contribution -0.040 0.593 0.585 0.834 sum 7.550 -13.073 -8.118 17.140 Atomic orbital electron populations 1.69938 1.05999 1.26645 1.51463 1.24968 0.94804 0.99130 0.95574 0.86657 0.79559 0.83174 0.78627 1.20286 1.21384 1.20303 1.21021 0.93086 0.90174 1.49530 0.92407 1.19029 0.92446 0.90404 0.97584 1.24074 0.97386 0.95532 0.91516 0.88987 1.24755 0.95749 0.91194 0.93847 1.86856 1.61397 1.36251 1.41428 1.23189 0.94159 0.86674 0.89965 1.17660 1.00856 0.93121 0.90451 1.21275 0.97669 0.93640 0.97042 1.21114 0.99165 1.00171 0.94121 1.21222 0.98318 0.92561 0.99540 1.21037 1.00980 0.96368 0.95606 1.21169 0.99061 0.88208 0.94842 1.98491 1.96090 1.09772 1.93518 1.75610 1.17366 1.13544 1.11446 0.93037 0.95972 0.95563 0.90160 0.87982 0.84372 0.85122 0.85075 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.50 -14.38 9.04 -34.44 -0.31 -14.69 16 8 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 9 C 0.04 1.11 4.64 -27.89 -0.13 0.98 16 10 C 0.02 0.53 3.64 -66.37 -0.24 0.29 16 11 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 12 C 0.02 0.38 7.72 38.12 0.29 0.67 16 13 O -0.35 -6.37 10.68 -16.53 -0.18 -6.54 16 14 C 0.29 5.41 7.57 -14.50 -0.11 5.30 16 15 C -0.02 -0.30 5.88 -104.93 -0.62 -0.92 16 16 C -0.08 -0.95 9.67 -39.21 -0.38 -1.33 16 17 C -0.13 -1.24 10.03 -39.64 -0.40 -1.63 16 18 C -0.10 -0.92 10.04 -39.52 -0.40 -1.32 16 19 C -0.12 -1.42 9.82 -39.60 -0.39 -1.81 16 20 C 0.00 -0.06 6.35 -39.10 -0.25 -0.31 16 21 Cl -0.01 -0.16 25.97 -51.86 -1.35 -1.50 16 22 N -0.45 -9.77 8.32 -51.29 -0.43 -10.20 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.42 7.92 -51.93 -0.41 1.00 16 27 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 28 H 0.14 1.55 7.77 -52.49 -0.41 1.15 16 29 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 287.46 15.07 4.33 4.33 Total: -1.00 -32.34 287.46 -8.24 -40.59 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: -3.32 Total: -4.22 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -3.02 Total: -13.24 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.31 Total: -36.79 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.18 Total: -6.54 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.35 Total: -1.50 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.34 -8.24 -40.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260476507.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.993 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds