Wall clock time and date at job start Mon Mar 30 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99838 * 2 1 4 4 H 1.48498 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47355 * 300.00195 * 3 2 1 6 6 H 1.48500 * 109.47108 * 60.00623 * 3 2 1 7 7 C 1.37872 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99842 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47065 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47056 * 305.00001 * 10 9 7 12 12 N 1.46906 * 109.47053 * 65.00331 * 10 9 7 13 13 C 1.50701 * 109.46958 * 184.99944 * 10 9 7 14 14 C 1.38416 * 119.80997 * 280.00430 * 13 10 9 15 15 C 1.37859 * 119.69087 * 180.02562 * 14 13 10 16 16 C 1.39288 * 120.24952 * 0.02562 * 15 14 13 17 17 S 1.76233 * 130.56005 * 179.97438 * 16 15 14 18 18 C 1.75786 * 90.58261 * 180.02562 * 17 16 15 19 19 O 1.21626 * 125.07804 * 179.97438 * 18 17 16 20 20 O 1.32215 * 109.83866 * 0.02562 * 18 17 16 21 21 C 1.34489 * 117.12881 * 359.97438 * 20 18 17 22 22 C 1.37611 * 119.81105 * 99.73177 * 13 10 9 23 23 H 0.97004 * 120.00248 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46685 * 60.00264 * 9 7 2 25 25 H 1.09002 * 109.47102 * 300.00311 * 9 7 2 26 26 H 1.00904 * 110.99860 * 296.04605 * 12 10 9 27 27 H 1.00902 * 110.99567 * 59.99323 * 12 10 9 28 28 H 1.07997 * 120.15457 * 359.97371 * 14 13 10 29 29 H 1.07996 * 119.87447 * 180.02562 * 15 14 13 30 30 H 1.08004 * 119.67544 * 359.97438 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9287 -3.5548 -0.8441 12 7 3.0093 -3.6544 1.2529 13 6 1.4958 -4.9636 -0.1256 14 6 0.8957 -5.5209 0.9902 15 6 0.2111 -6.7119 0.8743 16 6 0.1230 -7.3534 -0.3590 17 16 -0.6692 -8.8608 -0.8125 18 6 -0.1467 -8.6552 -2.4783 19 8 -0.3890 -9.4263 -3.3871 20 8 0.5501 -7.5376 -2.5952 21 6 0.7221 -6.8028 -1.4820 22 6 1.4072 -5.5884 -1.3486 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5566 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 3.5711 -2.8197 1.3291 27 1 2.3976 -3.7525 2.0493 28 1 0.9641 -5.0254 1.9474 29 1 -0.2586 -7.1491 1.7429 30 1 1.8757 -5.1410 -2.2128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260504732.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:18 Heat of formation + Delta-G solvation = -36.675914 kcal Electronic energy + Delta-G solvation = -16957.593781 eV Core-core repulsion = 14037.697874 eV Total energy + Delta-G solvation = -2919.895906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.13559 -39.26517 -37.95529 -35.38451 -32.63393 -31.05950 -30.08663 -28.16377 -26.14680 -24.41138 -23.57291 -22.11586 -20.62718 -18.97070 -17.69490 -17.40377 -17.11133 -16.72100 -15.79714 -15.33636 -14.73877 -14.39805 -14.07796 -13.80668 -13.53778 -13.22239 -12.77664 -12.44474 -12.22960 -11.92903 -11.75938 -11.27967 -11.05568 -10.75282 -10.54786 -10.51686 -10.27553 -9.87866 -9.32131 -8.80836 -8.58817 -8.26273 -7.86651 -6.20476 -4.26070 0.56231 0.79751 0.99806 1.25901 1.62289 2.14452 3.18895 3.27942 3.30101 3.49339 4.28619 4.29053 4.82997 5.04244 5.09690 5.15818 5.28280 5.47948 5.68885 5.73455 6.01932 6.13991 6.35374 6.46902 6.52085 6.64810 6.87541 7.27357 7.38549 7.71455 7.81119 8.02264 8.14647 8.80312 9.40453 10.90048 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037327 B = 0.004192 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.949519 B = 6677.346481 C = 6907.211909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.000 4.000 10 C 0.122 3.878 11 H 0.085 0.915 12 N -0.839 5.839 13 C -0.001 4.001 14 C -0.099 4.099 15 C -0.047 4.047 16 C -0.198 4.198 17 S 0.003 5.997 18 C 0.473 3.527 19 O -0.415 6.415 20 O -0.249 6.249 21 C 0.091 3.909 22 C -0.094 4.094 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.352 0.648 27 H 0.330 0.670 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 -12.794 2.218 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.039 4.039 10 C 0.011 3.989 11 H 0.103 0.897 12 N -0.368 5.368 13 C -0.003 4.003 14 C -0.119 4.119 15 C -0.069 4.069 16 C -0.312 4.312 17 S 0.241 5.759 18 C 0.207 3.793 19 O -0.303 6.303 20 O -0.160 6.160 21 C 0.042 3.958 22 C -0.114 4.114 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.166 0.834 27 H 0.142 0.858 28 H 0.159 0.841 29 H 0.155 0.845 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.165 -14.654 1.863 14.773 hybrid contribution 0.303 2.681 -0.432 2.733 sum 0.468 -11.973 1.432 12.067 Atomic orbital electron populations 1.69970 1.06144 1.26889 1.49726 1.25010 0.94828 0.99421 0.94827 0.86509 0.80103 0.83542 0.77715 1.19580 1.20929 1.20960 1.21136 0.92981 0.90556 1.52072 0.92264 1.19836 0.94322 0.91481 0.98244 1.20652 0.94925 0.89535 0.93804 0.89680 1.59261 1.27761 1.46322 1.03457 1.20067 0.93743 0.95395 0.91114 1.21012 0.96694 0.94544 0.99649 1.20383 0.97864 0.94620 0.94052 1.22370 1.09443 1.00557 0.98794 1.86158 1.61409 1.22977 1.05377 1.24325 0.79657 0.81262 0.94095 1.91022 1.54826 1.41137 1.43339 1.83167 1.63337 1.32611 1.36901 1.18940 1.01374 0.94394 0.81127 1.20228 1.00779 0.90925 0.99463 0.92794 0.95929 0.96093 0.83383 0.85804 0.84091 0.84542 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.90 13.29 55.43 0.74 -24.17 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.53 -13.19 8.55 -34.44 -0.29 -13.48 16 8 H 0.06 1.42 7.15 -52.48 -0.37 1.04 16 9 C 0.00 -0.01 4.60 -27.88 -0.13 -0.14 16 10 C 0.12 2.14 2.98 -68.86 -0.21 1.93 16 11 H 0.09 1.51 7.98 -51.93 -0.41 1.10 16 12 N -0.84 -13.24 9.02 -5.65 -0.05 -13.29 16 13 C 0.00 -0.02 4.94 -104.78 -0.52 -0.53 16 14 C -0.10 -1.33 9.29 -39.65 -0.37 -1.70 16 15 C -0.05 -0.57 10.06 -39.33 -0.40 -0.97 16 16 C -0.20 -2.64 6.45 -39.03 -0.25 -2.90 16 17 S 0.00 0.03 23.38 -107.50 -2.51 -2.48 16 18 C 0.47 6.90 8.92 101.05 0.90 7.80 16 19 O -0.42 -6.81 18.05 -19.17 -0.35 -7.16 16 20 O -0.25 -3.75 10.05 -14.12 -0.14 -3.90 16 21 C 0.09 1.33 7.06 -38.73 -0.27 1.05 16 22 C -0.09 -1.39 9.67 -39.12 -0.38 -1.77 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.35 5.78 7.90 -39.29 -0.31 5.47 16 27 H 0.33 4.82 7.33 -39.29 -0.29 4.53 16 28 H 0.14 1.70 6.66 -52.49 -0.35 1.35 16 29 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.14 1.97 8.01 -52.48 -0.42 1.55 16 LS Contribution 280.30 15.07 4.22 4.22 Total: -1.00 -27.96 280.30 -7.68 -35.64 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -2.56 Total: 5.20 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.01 Total: -9.17 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.69 Total: -37.46 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.49 Total: -11.05 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.51 Total: -2.48 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.96 -7.68 -35.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504732.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.033 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds