Wall clock time and date at job start Mon Mar 30 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99838 * 2 1 4 4 H 1.48498 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47355 * 300.00195 * 3 2 1 6 6 H 1.48500 * 109.47108 * 60.00623 * 3 2 1 7 7 C 1.37872 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99842 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47065 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47056 * 305.00001 * 10 9 7 12 12 N 1.46906 * 109.47053 * 65.00331 * 10 9 7 13 13 C 1.50701 * 109.46958 * 184.99944 * 10 9 7 14 14 C 1.38416 * 119.80997 * 280.00430 * 13 10 9 15 15 C 1.37859 * 119.69087 * 180.02562 * 14 13 10 16 16 C 1.39288 * 120.24952 * 0.02562 * 15 14 13 17 17 S 1.76233 * 130.56005 * 179.97438 * 16 15 14 18 18 C 1.75786 * 90.58261 * 180.02562 * 17 16 15 19 19 O 1.21626 * 125.07804 * 179.97438 * 18 17 16 20 20 O 1.32215 * 109.83866 * 0.02562 * 18 17 16 21 21 C 1.34489 * 117.12881 * 359.97438 * 20 18 17 22 22 C 1.37611 * 119.81105 * 99.73177 * 13 10 9 23 23 H 0.97004 * 120.00248 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46685 * 60.00264 * 9 7 2 25 25 H 1.09002 * 109.47102 * 300.00311 * 9 7 2 26 26 H 1.00904 * 110.99860 * 296.04605 * 12 10 9 27 27 H 1.00902 * 110.99567 * 59.99323 * 12 10 9 28 28 H 1.07997 * 120.15457 * 359.97371 * 14 13 10 29 29 H 1.07996 * 119.87447 * 180.02562 * 15 14 13 30 30 H 1.08004 * 119.67544 * 359.97438 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9287 -3.5548 -0.8441 12 7 3.0093 -3.6544 1.2529 13 6 1.4958 -4.9636 -0.1256 14 6 0.8957 -5.5209 0.9902 15 6 0.2111 -6.7119 0.8743 16 6 0.1230 -7.3534 -0.3590 17 16 -0.6692 -8.8608 -0.8125 18 6 -0.1467 -8.6552 -2.4783 19 8 -0.3890 -9.4263 -3.3871 20 8 0.5501 -7.5376 -2.5952 21 6 0.7221 -6.8028 -1.4820 22 6 1.4072 -5.5884 -1.3486 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5566 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 3.5711 -2.8197 1.3291 27 1 2.3976 -3.7525 2.0493 28 1 0.9641 -5.0254 1.9474 29 1 -0.2586 -7.1491 1.7429 30 1 1.8757 -5.1410 -2.2128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260504732.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:18 Heat of formation + Delta-G solvation = -53.209545 kcal Electronic energy + Delta-G solvation = -16958.310733 eV Core-core repulsion = 14037.697874 eV Total energy + Delta-G solvation = -2920.612858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.26592 -40.42324 -39.15631 -36.80624 -34.49604 -32.17854 -31.24606 -29.88611 -27.37486 -25.98662 -24.66763 -23.59617 -21.88679 -20.18348 -18.86635 -18.67570 -18.54869 -18.04471 -17.05687 -16.63574 -16.58970 -15.57095 -15.12275 -15.07258 -14.77526 -14.50843 -14.34832 -14.15492 -13.53188 -13.33138 -12.95723 -12.82160 -12.64005 -12.32440 -11.99458 -11.94823 -11.68914 -11.23461 -11.10123 -10.59685 -9.87557 -9.49331 -9.12638 -8.20567 -6.31428 -0.52168 -0.31877 -0.11026 0.19096 0.50855 1.02469 1.40996 1.44307 1.54655 2.35941 2.42974 3.14391 3.23090 3.61620 3.95241 4.05681 4.14941 4.21641 4.51624 4.67304 4.72208 4.85273 5.02645 5.27051 5.36720 5.40205 5.41996 5.65104 5.76667 5.78037 6.16699 6.39492 6.75469 6.85644 7.39076 8.90466 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037327 B = 0.004192 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.949519 B = 6677.346481 C = 6907.211909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.068 0.932 9 C 0.007 3.993 10 C 0.137 3.863 11 H 0.080 0.920 12 N -0.827 5.827 13 C -0.019 4.019 14 C -0.100 4.100 15 C -0.035 4.035 16 C -0.205 4.205 17 S 0.071 5.929 18 C 0.460 3.540 19 O -0.444 6.444 20 O -0.261 6.261 21 C 0.077 3.923 22 C -0.101 4.101 23 H 0.262 0.738 24 H -0.010 1.010 25 H 0.004 0.996 26 H 0.349 0.651 27 H 0.339 0.661 28 H 0.156 0.844 29 H 0.174 0.826 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -13.551 3.638 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.087 0.913 9 C -0.031 4.031 10 C 0.026 3.974 11 H 0.098 0.902 12 N -0.356 5.356 13 C -0.021 4.021 14 C -0.120 4.120 15 C -0.057 4.057 16 C -0.319 4.319 17 S 0.310 5.690 18 C 0.195 3.805 19 O -0.334 6.334 20 O -0.173 6.173 21 C 0.028 3.972 22 C -0.122 4.122 23 H 0.070 0.930 24 H 0.008 0.992 25 H 0.022 0.978 26 H 0.163 0.837 27 H 0.152 0.848 28 H 0.174 0.826 29 H 0.191 0.809 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.678 -15.422 3.307 15.787 hybrid contribution 0.121 2.849 -0.838 2.972 sum 0.799 -12.573 2.469 12.838 Atomic orbital electron populations 1.70098 1.07785 1.27580 1.51609 1.25856 0.95529 1.03042 0.94852 0.85491 0.79439 0.79362 0.77302 1.18181 1.21341 1.20791 1.21590 0.93640 0.91562 1.50348 0.91339 1.19718 0.94606 0.93070 0.95746 1.20301 0.93691 0.88977 0.94473 0.90229 1.59252 1.27363 1.45889 1.03124 1.19890 0.94971 0.95023 0.92198 1.21229 0.96185 0.95007 0.99555 1.20737 0.96633 0.93667 0.94643 1.22700 1.09014 1.01315 0.98866 1.85953 1.59909 1.21206 1.01954 1.24731 0.79608 0.80898 0.95230 1.91004 1.55839 1.41848 1.44696 1.83122 1.63574 1.33013 1.37606 1.18958 1.02157 0.94562 0.81534 1.20262 1.01068 0.91311 0.99516 0.92959 0.99196 0.97797 0.83682 0.84816 0.82616 0.80905 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.02 13.29 21.45 0.28 -52.74 16 2 C 0.01 0.29 5.46 84.65 0.46 0.76 16 3 Si 0.96 41.20 29.54 68.60 2.03 43.23 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -26.58 8.55 25.60 0.22 -26.36 16 8 H 0.07 3.22 7.15 -2.91 -0.02 3.20 16 9 C 0.01 0.33 4.60 29.85 0.14 0.47 16 10 C 0.14 4.76 2.98 44.17 0.13 4.89 16 11 H 0.08 2.82 7.98 -2.39 -0.02 2.80 16 12 N -0.83 -25.00 9.02 -171.79 -1.55 -26.55 16 13 C -0.02 -0.56 4.94 -19.97 -0.10 -0.66 16 14 C -0.10 -2.47 9.29 22.22 0.21 -2.26 16 15 C -0.04 -0.74 10.06 22.43 0.23 -0.52 16 16 C -0.21 -5.00 6.45 22.63 0.15 -4.86 16 17 S 0.07 1.55 23.38 -56.49 -1.32 0.23 16 18 C 0.46 13.06 8.92 113.37 1.01 14.07 16 19 O -0.44 -14.45 18.05 19.24 0.35 -14.10 16 20 O -0.26 -7.82 10.05 37.31 0.38 -7.45 16 21 C 0.08 2.18 7.06 22.82 0.16 2.34 16 22 C -0.10 -2.99 9.67 22.57 0.22 -2.77 16 23 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.35 10.99 7.90 -89.69 -0.71 10.29 16 27 H 0.34 9.31 7.33 -89.69 -0.66 8.65 16 28 H 0.16 3.35 6.66 -2.91 -0.02 3.33 16 29 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.15 4.08 8.01 -2.91 -0.02 4.06 16 Total: -1.00 -60.11 280.30 2.82 -57.29 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.16 Total: 14.98 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 2.82 Total: -14.90 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -1.26 Total: -79.28 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.72 Total: -21.55 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.32 Total: 0.23 kcal Total: -60.11 2.82 -57.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504732.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.083 kcal (2) G-P(sol) polarization free energy of solvation -60.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds