Wall clock time and date at job start Mon Mar 30 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47150 * 269.99675 * 3 2 1 5 5 H 1.48499 * 109.47135 * 29.99751 * 3 2 1 6 6 H 1.48500 * 109.47027 * 149.99836 * 3 2 1 7 7 C 1.37876 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47043 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47291 * 55.00498 * 10 9 7 12 12 N 1.46905 * 109.47421 * 295.00333 * 10 9 7 13 13 C 1.50700 * 109.47155 * 175.00170 * 10 9 7 14 14 C 1.38412 * 119.81064 * 79.98030 * 13 10 9 15 15 C 1.37852 * 119.69677 * 180.02562 * 14 13 10 16 16 C 1.39284 * 120.24805 * 0.02562 * 15 14 13 17 17 S 1.76236 * 130.56633 * 179.97438 * 16 15 14 18 18 C 1.75779 * 90.58956 * 180.02562 * 17 16 15 19 19 O 1.21623 * 125.08188 * 180.02562 * 18 17 16 20 20 O 1.32217 * 109.83535 * 359.97438 * 18 17 16 21 21 C 1.34492 * 117.13136 * 359.74692 * 20 18 17 22 22 C 1.37618 * 119.81308 * 260.00298 * 13 10 9 23 23 H 0.96998 * 119.99842 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46948 * 60.00650 * 9 7 2 25 25 H 1.09000 * 109.47715 * 300.00338 * 9 7 2 26 26 H 1.00896 * 111.00040 * 176.04813 * 12 10 9 27 27 H 1.00897 * 110.99337 * 299.99957 * 12 10 9 28 28 H 1.07996 * 120.15125 * 359.97438 * 14 13 10 29 29 H 1.08003 * 119.87706 * 179.97438 * 15 14 13 30 30 H 1.08002 * 119.67103 * 359.97438 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 1 2.9299 -3.5549 0.8427 12 7 3.0075 -3.6545 -1.2544 13 6 1.4959 -4.9636 0.1264 14 6 0.8938 -5.5207 -0.9884 15 6 0.2085 -6.7111 -0.8714 16 6 0.1207 -7.3517 0.3623 17 16 -0.6733 -8.8578 0.8177 18 6 -0.1501 -8.6512 2.4830 19 8 -0.3931 -9.4210 3.3927 20 8 0.5481 -7.5344 2.5987 21 6 0.7256 -6.8038 1.4835 22 6 1.4138 -5.5912 1.3484 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 3.7151 -4.3737 -1.2522 27 1 2.3946 -3.7527 -2.0498 28 1 0.9598 -5.0247 -1.9455 29 1 -0.2628 -7.1482 -1.7393 30 1 1.8879 -5.1464 2.2108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260504735.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:19 Heat of formation + Delta-G solvation = -31.528904 kcal Electronic energy + Delta-G solvation = -16956.518740 eV Core-core repulsion = 14036.846025 eV Total energy + Delta-G solvation = -2919.672715 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.22380 -39.38419 -38.04909 -35.30660 -32.55347 -31.13582 -30.04979 -28.41825 -26.16189 -24.29449 -23.66774 -22.08996 -20.65648 -19.04403 -17.78356 -17.48365 -17.08141 -16.54913 -15.84527 -15.42394 -14.73128 -14.36883 -14.25686 -14.14436 -13.83817 -13.26076 -12.77470 -12.54215 -12.17293 -11.87239 -11.41881 -11.24099 -10.90320 -10.77604 -10.62664 -10.43889 -10.26187 -9.49244 -9.20569 -8.92197 -8.39310 -8.28256 -8.11461 -6.00509 -4.00213 0.48167 0.67985 0.87875 1.16895 1.53153 2.06378 3.33714 3.34713 3.40184 3.44033 4.18299 4.46681 4.78306 4.93003 4.98431 5.14991 5.20900 5.38595 5.59089 5.63957 5.95978 5.98592 6.25566 6.39408 6.43119 6.61966 6.77951 7.37132 7.53660 7.78557 7.95609 8.00038 8.39265 9.05819 9.62783 11.11095 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037036 B = 0.004198 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.844047 B = 6668.699479 C = 6898.705738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.052 3.948 3 Si 0.894 3.106 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.498 4.498 8 H 0.064 0.936 9 C 0.036 3.964 10 C 0.130 3.870 11 H 0.087 0.913 12 N -0.818 5.818 13 C -0.052 4.052 14 C -0.112 4.112 15 C -0.044 4.044 16 C -0.198 4.198 17 S 0.005 5.995 18 C 0.472 3.528 19 O -0.413 6.413 20 O -0.248 6.248 21 C 0.092 3.908 22 C -0.090 4.090 23 H 0.259 0.741 24 H 0.019 0.981 25 H 0.022 0.978 26 H 0.325 0.675 27 H 0.336 0.664 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -15.166 -1.989 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.148 4.148 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.536 4.536 8 H 0.082 0.918 9 C -0.001 4.001 10 C 0.018 3.982 11 H 0.105 0.895 12 N -0.345 5.345 13 C -0.056 4.056 14 C -0.132 4.132 15 C -0.066 4.066 16 C -0.311 4.311 17 S 0.243 5.757 18 C 0.206 3.794 19 O -0.301 6.301 20 O -0.160 6.160 21 C 0.043 3.957 22 C -0.111 4.111 23 H 0.069 0.931 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.137 0.863 27 H 0.150 0.850 28 H 0.159 0.841 29 H 0.155 0.845 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.353 -15.605 -1.718 15.704 hybrid contribution 0.463 0.731 0.459 0.979 sum 0.816 -14.874 -1.259 14.950 Atomic orbital electron populations 1.69963 1.06047 1.26577 1.51537 1.25015 0.94809 0.99272 0.95688 0.86558 0.79758 0.83414 0.78011 1.20798 1.21538 1.19906 1.21107 0.93426 0.89832 1.49281 0.91782 1.19181 0.92764 0.90520 0.97652 1.20994 0.95052 0.89142 0.93005 0.89532 1.58832 1.17669 1.54300 1.03672 1.21443 0.95339 0.97479 0.91353 1.21055 0.97609 0.94728 0.99807 1.20380 0.97632 0.94494 0.94105 1.22406 1.09158 1.00763 0.98816 1.86199 1.61324 1.22796 1.05346 1.24334 0.79702 0.81229 0.94117 1.91027 1.54750 1.41087 1.43212 1.83185 1.63306 1.32797 1.36717 1.19064 1.01055 0.94479 0.81139 1.20358 1.00533 0.90663 0.99517 0.93111 0.96231 0.95932 0.86345 0.85008 0.84099 0.84477 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.50 -13.10 8.84 -34.44 -0.30 -13.40 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.04 0.83 4.60 -27.88 -0.13 0.70 16 10 C 0.13 2.23 2.92 -68.86 -0.20 2.03 16 11 H 0.09 1.51 7.98 -51.93 -0.41 1.09 16 12 N -0.82 -12.63 8.77 -5.65 -0.05 -12.68 16 13 C -0.05 -0.75 4.93 -104.78 -0.52 -1.27 16 14 C -0.11 -1.40 9.29 -39.66 -0.37 -1.77 16 15 C -0.04 -0.50 10.06 -39.33 -0.40 -0.90 16 16 C -0.20 -2.51 6.45 -39.03 -0.25 -2.76 16 17 S 0.01 0.06 23.38 -107.50 -2.51 -2.45 16 18 C 0.47 6.68 8.92 101.05 0.90 7.58 16 19 O -0.41 -6.60 18.05 -19.16 -0.35 -6.95 16 20 O -0.25 -3.62 10.05 -14.13 -0.14 -3.76 16 21 C 0.09 1.28 7.06 -38.73 -0.27 1.01 16 22 C -0.09 -1.27 9.67 -39.12 -0.38 -1.65 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.33 4.08 9.06 -39.29 -0.36 3.72 16 27 H 0.34 4.81 7.34 -39.29 -0.29 4.52 16 28 H 0.14 1.57 6.66 -52.49 -0.35 1.22 16 29 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.15 1.89 8.01 -52.49 -0.42 1.47 16 LS Contribution 282.03 15.07 4.25 4.25 Total: -1.00 -29.69 282.03 -7.74 -37.42 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -2.64 Total: 2.42 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.01 Total: -9.09 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.69 Total: -38.01 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.49 Total: -10.71 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.51 Total: -2.45 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.69 -7.74 -37.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504735.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.895 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds