Wall clock time and date at job start Mon Mar 30 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47150 * 269.99675 * 3 2 1 5 5 H 1.48499 * 109.47135 * 29.99751 * 3 2 1 6 6 H 1.48500 * 109.47027 * 149.99836 * 3 2 1 7 7 C 1.37876 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47043 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47291 * 55.00498 * 10 9 7 12 12 N 1.46905 * 109.47421 * 295.00333 * 10 9 7 13 13 C 1.50700 * 109.47155 * 175.00170 * 10 9 7 14 14 C 1.38412 * 119.81064 * 79.98030 * 13 10 9 15 15 C 1.37852 * 119.69677 * 180.02562 * 14 13 10 16 16 C 1.39284 * 120.24805 * 0.02562 * 15 14 13 17 17 S 1.76236 * 130.56633 * 179.97438 * 16 15 14 18 18 C 1.75779 * 90.58956 * 180.02562 * 17 16 15 19 19 O 1.21623 * 125.08188 * 180.02562 * 18 17 16 20 20 O 1.32217 * 109.83535 * 359.97438 * 18 17 16 21 21 C 1.34492 * 117.13136 * 359.74692 * 20 18 17 22 22 C 1.37618 * 119.81308 * 260.00298 * 13 10 9 23 23 H 0.96998 * 119.99842 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46948 * 60.00650 * 9 7 2 25 25 H 1.09000 * 109.47715 * 300.00338 * 9 7 2 26 26 H 1.00896 * 111.00040 * 176.04813 * 12 10 9 27 27 H 1.00897 * 110.99337 * 299.99957 * 12 10 9 28 28 H 1.07996 * 120.15125 * 359.97438 * 14 13 10 29 29 H 1.08003 * 119.87706 * 179.97438 * 15 14 13 30 30 H 1.08002 * 119.67103 * 359.97438 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 1 2.9299 -3.5549 0.8427 12 7 3.0075 -3.6545 -1.2544 13 6 1.4959 -4.9636 0.1264 14 6 0.8938 -5.5207 -0.9884 15 6 0.2085 -6.7111 -0.8714 16 6 0.1207 -7.3517 0.3623 17 16 -0.6733 -8.8578 0.8177 18 6 -0.1501 -8.6512 2.4830 19 8 -0.3931 -9.4210 3.3927 20 8 0.5481 -7.5344 2.5987 21 6 0.7256 -6.8038 1.4835 22 6 1.4138 -5.5912 1.3484 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 3.7151 -4.3737 -1.2522 27 1 2.3946 -3.7527 -2.0498 28 1 0.9598 -5.0247 -1.9455 29 1 -0.2628 -7.1482 -1.7393 30 1 1.8879 -5.1464 2.2108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260504735.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:19 Heat of formation + Delta-G solvation = -49.794941 kcal Electronic energy + Delta-G solvation = -16957.310815 eV Core-core repulsion = 14036.846025 eV Total energy + Delta-G solvation = -2920.464790 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.30499 -40.49216 -39.20292 -36.67336 -34.49170 -32.18755 -31.15280 -30.17519 -27.33960 -25.93021 -24.70324 -23.53176 -21.89839 -20.22988 -18.87092 -18.59285 -18.45980 -18.10364 -17.02618 -16.82069 -16.38608 -15.72299 -15.43572 -15.15962 -14.97630 -14.57634 -14.27909 -13.93169 -13.51481 -13.13463 -12.95097 -12.79679 -12.49458 -12.36333 -12.02889 -11.81954 -11.72072 -11.18981 -10.96287 -10.47898 -9.94074 -9.50238 -9.19703 -8.09498 -6.14680 -0.55870 -0.38002 -0.16992 0.15216 0.46563 0.99490 1.46477 1.47137 1.57470 2.29715 2.50268 3.18221 3.25248 3.67159 3.86580 3.91950 4.06398 4.16545 4.49769 4.64860 4.65735 4.92797 4.96372 5.21795 5.32935 5.37960 5.51121 5.72103 5.73012 5.90026 6.31978 6.52466 6.86890 7.00133 7.52338 9.02045 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037036 B = 0.004198 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.844047 B = 6668.699479 C = 6898.705738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.003 4.003 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.042 3.958 10 C 0.146 3.854 11 H 0.081 0.919 12 N -0.826 5.826 13 C -0.063 4.063 14 C -0.109 4.109 15 C -0.033 4.033 16 C -0.204 4.204 17 S 0.071 5.929 18 C 0.459 3.541 19 O -0.443 6.443 20 O -0.261 6.261 21 C 0.077 3.923 22 C -0.097 4.097 23 H 0.259 0.741 24 H 0.002 0.998 25 H -0.006 1.006 26 H 0.345 0.655 27 H 0.343 0.657 28 H 0.157 0.843 29 H 0.173 0.827 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 -16.008 -3.414 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.199 4.199 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.004 3.996 10 C 0.034 3.966 11 H 0.099 0.901 12 N -0.356 5.356 13 C -0.067 4.067 14 C -0.129 4.129 15 C -0.054 4.054 16 C -0.318 4.318 17 S 0.310 5.690 18 C 0.195 3.805 19 O -0.333 6.333 20 O -0.173 6.173 21 C 0.028 3.972 22 C -0.117 4.117 23 H 0.067 0.933 24 H 0.020 0.980 25 H 0.012 0.988 26 H 0.159 0.841 27 H 0.158 0.842 28 H 0.175 0.825 29 H 0.191 0.809 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.821 -16.462 -3.163 16.783 hybrid contribution 0.309 0.935 0.860 1.308 sum 1.130 -15.527 -2.303 15.737 Atomic orbital electron populations 1.70086 1.07533 1.27226 1.53168 1.25824 0.95556 1.02786 0.95753 0.85580 0.78682 0.79400 0.78126 1.20238 1.21639 1.19037 1.21508 0.93598 0.91316 1.47858 0.91862 1.18990 0.93252 0.92032 0.95307 1.20446 0.93873 0.88489 0.93789 0.90112 1.58701 1.18173 1.55623 1.03105 1.21104 0.96472 0.96779 0.92372 1.21259 0.96872 0.95040 0.99726 1.20729 0.96479 0.93611 0.94620 1.22728 1.08731 1.01429 0.98927 1.86002 1.59873 1.21178 1.01957 1.24738 0.79646 0.80868 0.95233 1.91008 1.55816 1.41849 1.44602 1.83137 1.63529 1.33185 1.37484 1.19082 1.01918 0.94691 0.81501 1.20379 1.00757 0.90990 0.99583 0.93269 0.97998 0.98816 0.84136 0.84181 0.82541 0.80940 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.11 13.29 21.45 0.28 -54.82 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.50 -26.66 8.84 25.60 0.23 -26.43 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.04 1.94 4.60 29.85 0.14 2.08 16 10 C 0.15 4.96 2.92 44.17 0.13 5.09 16 11 H 0.08 2.80 7.98 -2.39 -0.02 2.79 16 12 N -0.83 -24.33 8.77 -171.79 -1.51 -25.84 16 13 C -0.06 -1.76 4.93 -19.97 -0.10 -1.86 16 14 C -0.11 -2.47 9.29 22.22 0.21 -2.26 16 15 C -0.03 -0.64 10.06 22.43 0.23 -0.41 16 16 C -0.20 -4.70 6.45 22.63 0.15 -4.55 16 17 S 0.07 1.48 23.38 -56.49 -1.32 0.16 16 18 C 0.46 12.65 8.92 113.37 1.01 13.66 16 19 O -0.44 -14.10 18.05 19.24 0.35 -13.75 16 20 O -0.26 -7.55 10.05 37.27 0.37 -7.17 16 21 C 0.08 2.08 7.06 22.82 0.16 2.24 16 22 C -0.10 -2.68 9.67 22.57 0.22 -2.46 16 23 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 24 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.35 7.95 9.06 -89.70 -0.81 7.14 16 27 H 0.34 9.22 7.34 -89.70 -0.66 8.56 16 28 H 0.16 3.04 6.66 -2.91 -0.02 3.02 16 29 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 30 H 0.15 3.87 8.01 -2.91 -0.02 3.85 16 Total: -1.00 -64.01 282.03 2.76 -61.25 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -0.27 Total: 9.28 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 2.82 Total: -14.60 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -1.22 Total: -80.66 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.72 Total: -20.92 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.32 Total: 0.16 kcal Total: -64.01 2.76 -61.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504735.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.456 kcal (2) G-P(sol) polarization free energy of solvation -64.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds