Wall clock time and date at job start Mon Mar 30 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39867 * 125.45355 * 2 1 4 4 C 1.30302 * 110.08118 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 126.12066 * 180.02562 * 4 3 2 6 6 C 1.46005 * 107.76055 * 0.02562 * 4 3 2 7 7 C 1.39925 * 134.02563 * 179.97438 * 6 4 3 8 8 C 1.36470 * 119.63982 * 180.02562 * 7 6 4 9 9 C 1.50694 * 119.69162 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47094 * 339.99522 * 9 8 7 11 11 N 1.46900 * 109.47042 * 220.00256 * 9 8 7 12 12 C 1.50694 * 109.47250 * 100.00187 * 9 8 7 13 13 H 1.07997 * 120.00382 * 359.97438 * 12 9 8 14 14 C 1.37883 * 120.00260 * 180.02562 * 12 9 8 15 15 N 1.31504 * 120.00284 * 179.97438 * 14 12 9 16 16 Si 1.86800 * 119.99615 * 359.97438 * 14 12 9 17 17 H 1.48505 * 109.47279 * 89.99889 * 16 14 12 18 18 H 1.48497 * 109.47182 * 210.00124 * 16 14 12 19 19 H 1.48501 * 109.47438 * 329.99934 * 16 14 12 20 20 C 1.38970 * 120.62332 * 359.93763 * 8 7 6 21 21 C 1.36594 * 120.81341 * 0.09514 * 20 8 7 22 22 C 1.37044 * 125.44866 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.46611 * 270.04339 * 1 2 3 24 24 H 1.09003 * 109.46864 * 30.03848 * 1 2 3 25 25 H 1.08995 * 109.47311 * 150.04115 * 1 2 3 26 26 H 1.08003 * 120.18063 * 359.76339 * 7 6 4 27 27 H 1.00898 * 111.00149 * 299.99296 * 11 9 8 28 28 H 1.00897 * 111.00293 * 63.95304 * 11 9 8 29 29 H 0.96997 * 120.00203 * 179.97438 * 15 14 12 30 30 H 1.07998 * 119.59262 * 180.02562 * 20 8 7 31 31 H 1.08000 * 120.07290 * 179.91324 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2763 1.1393 0.0000 4 6 3.5327 0.7939 0.0005 5 17 4.8912 1.8748 0.0014 6 6 3.5935 -0.6649 0.0003 7 6 4.6393 -1.5945 0.0002 8 6 4.3556 -2.9294 -0.0005 9 6 5.4809 -3.9317 -0.0001 10 1 6.3948 -3.4521 -0.3507 11 7 5.1416 -5.0493 -0.8911 12 6 5.6909 -4.4506 1.3991 13 1 5.0717 -4.0904 2.2072 14 6 6.6742 -5.3846 1.6477 15 7 6.8578 -5.8371 2.8687 16 14 7.7458 -6.0072 0.2500 17 1 8.9463 -5.1422 0.1234 18 1 8.1684 -7.4022 0.5338 19 1 6.9745 -5.9721 -1.0186 20 6 3.0387 -3.3733 0.0001 21 6 2.0009 -2.4851 -0.0004 22 6 2.2598 -1.1164 0.0005 23 1 -0.3633 0.0008 1.0277 24 1 -0.3633 0.8897 -0.5145 25 1 -0.3634 -0.8903 -0.5132 26 1 5.6654 -1.2575 -0.0035 27 1 4.2974 -5.5107 -0.5870 28 1 5.0591 -4.7373 -1.8471 29 1 7.5493 -6.4944 3.0436 30 1 2.8332 -4.4335 -0.0001 31 1 0.9821 -2.8432 -0.0013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260516517.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:52 Heat of formation + Delta-G solvation = 72.755850 kcal Electronic energy + Delta-G solvation = -17267.549629 eV Core-core repulsion = 14382.648085 eV Total energy + Delta-G solvation = -2884.901544 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.36256 -39.13989 -37.94888 -35.87704 -34.35532 -33.79139 -31.45255 -30.47569 -28.29821 -27.25212 -24.26934 -24.04359 -21.82165 -21.57824 -18.88237 -18.34180 -17.71352 -16.72599 -16.65546 -16.39991 -15.92205 -15.49362 -15.31857 -14.80107 -14.35771 -14.29368 -13.81833 -13.54182 -13.35659 -13.29325 -12.78472 -12.70780 -12.45858 -12.29634 -11.95726 -11.71830 -11.66211 -11.32142 -10.78461 -10.67253 -9.70828 -8.90010 -8.69372 -8.17369 -6.30268 -0.16228 0.27020 0.49407 1.18893 1.57329 1.64564 1.67678 2.00573 2.66916 2.77896 3.21291 3.31714 3.58333 3.91682 4.03545 4.28216 4.36500 4.42085 4.43503 4.50757 4.65677 4.74178 4.92180 5.04564 5.19130 5.39070 5.58857 5.75289 5.84000 5.99874 6.22222 6.31640 6.57744 6.87176 7.13610 7.47987 8.95868 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.005725 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.504160 B = 4889.499456 C = 5556.598939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.397 5.397 3 N -0.255 5.255 4 C 0.126 3.874 5 Cl 0.026 6.974 6 C -0.182 4.182 7 C -0.054 4.054 8 C -0.118 4.118 9 C 0.232 3.768 10 H 0.041 0.959 11 N -0.835 5.835 12 C -0.512 4.512 13 H 0.024 0.976 14 C 0.025 3.975 15 N -0.954 5.954 16 Si 0.927 3.073 17 H -0.304 1.304 18 H -0.318 1.318 19 H -0.150 1.150 20 C -0.060 4.060 21 C -0.130 4.130 22 C 0.115 3.885 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.338 0.662 28 H 0.332 0.668 29 H 0.261 0.739 30 H 0.142 0.858 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 10.654 -10.656 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.188 5.188 3 N -0.073 5.073 4 C -0.076 4.076 5 Cl 0.054 6.946 6 C -0.191 4.191 7 C -0.075 4.075 8 C -0.122 4.122 9 C 0.122 3.878 10 H 0.059 0.941 11 N -0.367 5.367 12 C -0.551 4.551 13 H 0.042 0.958 14 C -0.173 4.173 15 N -0.594 5.594 16 Si 0.752 3.248 17 H -0.233 1.233 18 H -0.247 1.247 19 H -0.071 1.071 20 C -0.080 4.080 21 C -0.152 4.152 22 C 0.001 3.999 23 H 0.101 0.899 24 H 0.119 0.881 25 H 0.131 0.869 26 H 0.142 0.858 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.069 0.931 30 H 0.159 0.841 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.916 11.316 -10.358 20.054 hybrid contribution 0.708 -0.186 0.316 0.798 sum -12.207 11.130 -10.042 19.332 Atomic orbital electron populations 1.22220 0.70758 1.06245 1.04593 1.48272 1.06864 0.99388 1.64306 1.76379 1.00899 1.10338 1.19698 1.23809 0.89663 0.89445 1.04675 1.98386 1.37052 1.62417 1.96737 1.19640 0.94571 0.90830 1.14043 1.20255 0.97883 0.91688 0.97694 1.20593 0.96865 0.94633 1.00072 1.18170 0.91375 0.86651 0.91588 0.94073 1.59689 1.41975 1.29796 1.05190 1.20981 1.17568 1.23989 0.92515 0.95763 1.25901 0.98224 0.95347 0.97833 1.70109 1.34384 1.31819 1.23088 0.86369 0.77196 0.74640 0.86547 1.23254 1.24681 1.07055 1.20814 0.91215 1.00521 0.95484 1.20031 1.01186 0.87431 1.06521 1.18921 0.89487 0.90495 1.01037 0.89914 0.88111 0.86904 0.85799 0.84753 0.85479 0.93096 0.84055 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.48 11.40 127.77 1.46 2.93 16 2 N -0.40 -10.42 4.05 -361.04 -1.46 -11.89 16 3 N -0.25 -7.75 12.40 -45.94 -0.57 -8.31 16 4 C 0.13 3.98 8.09 86.93 0.70 4.68 16 5 Cl 0.03 0.72 29.33 -2.72 -0.08 0.64 16 6 C -0.18 -6.19 6.37 -20.23 -0.13 -6.32 16 7 C -0.05 -1.96 9.66 22.27 0.22 -1.75 16 8 C -0.12 -4.37 4.85 -20.10 -0.10 -4.46 16 9 C 0.23 9.80 2.33 43.42 0.10 9.91 16 10 H 0.04 1.79 7.40 -2.39 -0.02 1.77 16 11 N -0.84 -29.74 5.66 -174.97 -0.99 -30.73 16 12 C -0.51 -28.02 9.28 25.60 0.24 -27.79 16 13 H 0.02 1.51 7.98 -2.91 -0.02 1.48 16 14 C 0.03 1.44 5.47 84.66 0.46 1.90 16 15 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 16 Si 0.93 43.63 26.94 68.60 1.85 45.48 16 17 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 18 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 19 H -0.15 -6.07 5.17 99.48 0.51 -5.56 16 20 C -0.06 -1.85 9.20 22.06 0.20 -1.65 16 21 C -0.13 -3.45 9.96 22.14 0.22 -3.23 16 22 C 0.11 3.42 6.87 39.21 0.27 3.69 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.11 1.07 8.13 -2.39 -0.02 1.05 16 26 H 0.12 4.41 8.01 -2.91 -0.02 4.38 16 27 H 0.34 11.33 7.30 -89.70 -0.66 10.67 16 28 H 0.33 9.71 9.06 -89.70 -0.81 8.90 16 29 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.14 4.01 6.62 -2.91 -0.02 3.99 16 31 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -71.11 282.36 2.21 -68.89 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -0.48 Total: 17.83 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 3.64 Total: -22.08 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -2.72 Total: -110.76 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.85 Total: 45.48 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -71.11 2.21 -68.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260516517.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.651 kcal (2) G-P(sol) polarization free energy of solvation -71.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds