Wall clock time and date at job start Mon Mar 30 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47274 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47362 * 300.00004 * 3 2 1 6 6 H 1.48499 * 109.47078 * 60.00163 * 3 2 1 7 7 C 1.37875 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46815 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.92415 * 302.45754 * 10 9 7 12 12 C 1.54821 * 111.07600 * 178.44527 * 10 9 7 13 13 N 1.47595 * 101.99826 * 218.47281 * 12 10 9 14 14 C 1.29654 * 108.44460 * 15.06323 * 13 12 10 15 15 C 1.47956 * 123.08384 * 180.38948 * 14 13 12 16 16 C 1.39523 * 120.12117 * 179.74921 * 15 14 13 17 17 C 1.37933 * 119.87626 * 179.72417 * 16 15 14 18 18 C 1.38483 * 120.12094 * 0.55407 * 17 16 15 19 19 Cl 1.73597 * 119.87672 * 179.74527 * 18 17 16 20 20 C 1.38488 * 120.25208 * 359.72306 * 18 17 16 21 21 C 1.37936 * 120.12228 * 359.97438 * 20 18 17 22 22 O 1.34934 * 113.82845 * 0.38920 * 14 13 12 23 23 H 0.97001 * 119.99978 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47207 * 60.00054 * 9 7 2 25 25 H 1.08998 * 109.46882 * 299.99487 * 9 7 2 26 26 H 1.08996 * 110.92223 * 100.30198 * 12 10 9 27 27 H 1.08991 * 110.92787 * 336.65053 * 12 10 9 28 28 H 1.07998 * 120.06072 * 359.97438 * 16 15 14 29 29 H 1.07994 * 119.93873 * 180.27728 * 17 16 15 30 30 H 1.08001 * 119.94296 * 180.02562 * 20 18 17 31 31 H 1.07990 * 120.06760 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9135 -3.6029 -0.8586 12 6 1.5094 -5.0237 0.0397 13 7 2.3763 -5.8153 0.9343 14 6 3.1728 -5.0038 1.5573 15 6 4.1881 -5.4588 2.5326 16 6 5.0175 -4.5313 3.1640 17 6 5.9585 -4.9605 4.0767 18 6 6.0887 -6.3101 4.3580 19 17 7.2796 -6.8438 5.5028 20 6 5.2722 -7.2357 3.7300 21 6 4.3235 -6.8173 2.8203 22 8 2.9907 -3.7064 1.2346 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 1.4639 -5.4703 -0.9535 27 1 0.5106 -4.9145 0.4620 28 1 4.9200 -3.4790 2.9417 29 1 6.5979 -4.2430 4.5693 30 1 5.3778 -8.2871 3.9535 31 1 3.6875 -7.5399 2.3308 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260536950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:53 Heat of formation + Delta-G solvation = -1.828404 kcal Electronic energy + Delta-G solvation = -16768.979291 eV Core-core repulsion = 13848.550780 eV Total energy + Delta-G solvation = -2920.428511 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.70006 -39.13115 -36.67063 -33.62728 -33.13509 -31.93017 -31.21990 -30.09128 -26.70125 -23.80072 -23.28044 -22.44905 -20.90981 -19.89331 -17.54710 -16.70019 -16.32673 -15.77328 -15.36080 -14.89713 -14.51621 -14.09858 -13.68864 -13.56789 -13.44622 -12.66330 -12.46175 -12.06366 -11.83539 -11.72371 -11.61689 -11.32089 -11.05694 -10.99840 -10.70632 -10.59585 -10.16088 -9.62293 -9.23538 -9.14043 -9.10527 -8.48260 -8.30411 -6.10176 -4.12648 0.58244 1.14407 1.89014 2.53982 3.26882 3.34610 3.39141 3.51661 3.66614 4.34600 4.39246 4.69327 4.70660 5.13376 5.18941 5.24216 5.29878 5.47206 5.57301 5.66823 5.79669 5.83405 6.03186 6.17933 6.22118 6.30562 6.46952 6.56241 6.80794 7.36652 7.49458 7.85821 8.06128 8.24284 8.91322 9.51579 11.01214 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.004204 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.392896 B = 6659.177258 C = 7616.367197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.027 3.973 10 C 0.063 3.937 11 H 0.081 0.919 12 C -0.008 4.008 13 N -0.546 5.546 14 C 0.330 3.670 15 C -0.028 4.028 16 C -0.064 4.064 17 C -0.117 4.117 18 C -0.021 4.021 19 Cl -0.072 7.072 20 C -0.120 4.120 21 C -0.058 4.058 22 O -0.320 6.320 23 H 0.262 0.738 24 H 0.041 0.959 25 H 0.028 0.972 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.948 -13.154 7.222 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.078 0.922 9 C -0.010 4.010 10 C 0.007 3.993 11 H 0.099 0.901 12 C -0.137 4.137 13 N -0.282 5.282 14 C 0.107 3.893 15 C -0.030 4.030 16 C -0.084 4.084 17 C -0.136 4.136 18 C -0.048 4.048 19 Cl -0.044 7.044 20 C -0.139 4.139 21 C -0.077 4.077 22 O -0.223 6.223 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.662 -13.712 7.255 18.824 hybrid contribution 0.342 1.693 -0.152 1.734 sum 11.004 -12.019 7.103 17.776 Atomic orbital electron populations 1.69955 1.06086 1.26809 1.50612 1.25000 0.94871 0.99412 0.95088 0.86471 0.80135 0.83425 0.77627 1.19635 1.20963 1.20912 1.21128 0.93225 0.90350 1.50850 0.92210 1.19284 0.92679 0.90356 0.98660 1.24547 0.93595 0.97620 0.83579 0.90146 1.24152 0.98965 0.91983 0.98592 1.74886 1.08536 1.30943 1.13855 1.23302 0.91662 0.82100 0.92220 1.17938 0.94858 0.93652 0.96539 1.21426 0.92635 1.00878 0.93490 1.21002 0.99682 0.93825 0.99045 1.21143 0.94049 0.94375 0.95222 1.98372 1.56215 1.90547 1.59221 1.20972 0.95751 0.99737 0.97393 1.21221 0.96455 0.94661 0.95396 1.87145 1.71146 1.22928 1.41049 0.92859 0.94100 0.95323 0.88811 0.89005 0.83384 0.84271 0.84350 0.83503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.32 8.96 -34.44 -0.31 -14.63 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.68 4.71 -27.88 -0.13 0.55 16 10 C 0.06 1.32 3.68 -25.77 -0.09 1.22 16 11 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 12 C -0.01 -0.14 7.69 -2.48 -0.02 -0.16 16 13 N -0.55 -9.81 11.15 -57.67 -0.64 -10.45 16 14 C 0.33 5.94 7.59 -14.49 -0.11 5.83 16 15 C -0.03 -0.42 5.87 -104.96 -0.62 -1.03 16 16 C -0.06 -0.84 9.67 -39.21 -0.38 -1.22 16 17 C -0.12 -1.29 9.81 -39.60 -0.39 -1.68 16 18 C -0.02 -0.22 6.33 -39.40 -0.25 -0.47 16 19 Cl -0.07 -0.69 28.95 -51.86 -1.50 -2.19 16 20 C -0.12 -1.24 9.81 -39.60 -0.39 -1.63 16 21 C -0.06 -0.70 9.63 -39.21 -0.38 -1.08 16 22 O -0.32 -6.73 10.24 -16.52 -0.17 -6.90 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.09 1.68 7.91 -51.93 -0.41 1.26 16 28 H 0.15 1.99 7.77 -52.49 -0.41 1.58 16 29 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.15 1.70 7.71 -52.49 -0.40 1.30 16 LS Contribution 291.81 15.07 4.40 4.40 Total: -1.00 -29.94 291.81 -8.66 -38.60 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -3.30 Total: -1.50 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -3.16 Total: -12.76 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.09 Total: -35.98 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.17 Total: -6.90 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.94 -8.66 -38.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260536950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.775 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds