Wall clock time and date at job start Mon Mar 30 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47274 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47362 * 300.00004 * 3 2 1 6 6 H 1.48499 * 109.47078 * 60.00163 * 3 2 1 7 7 C 1.37875 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46815 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.92415 * 302.45754 * 10 9 7 12 12 C 1.54821 * 111.07600 * 178.44527 * 10 9 7 13 13 N 1.47595 * 101.99826 * 218.47281 * 12 10 9 14 14 C 1.29654 * 108.44460 * 15.06323 * 13 12 10 15 15 C 1.47956 * 123.08384 * 180.38948 * 14 13 12 16 16 C 1.39523 * 120.12117 * 179.74921 * 15 14 13 17 17 C 1.37933 * 119.87626 * 179.72417 * 16 15 14 18 18 C 1.38483 * 120.12094 * 0.55407 * 17 16 15 19 19 Cl 1.73597 * 119.87672 * 179.74527 * 18 17 16 20 20 C 1.38488 * 120.25208 * 359.72306 * 18 17 16 21 21 C 1.37936 * 120.12228 * 359.97438 * 20 18 17 22 22 O 1.34934 * 113.82845 * 0.38920 * 14 13 12 23 23 H 0.97001 * 119.99978 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47207 * 60.00054 * 9 7 2 25 25 H 1.08998 * 109.46882 * 299.99487 * 9 7 2 26 26 H 1.08996 * 110.92223 * 100.30198 * 12 10 9 27 27 H 1.08991 * 110.92787 * 336.65053 * 12 10 9 28 28 H 1.07998 * 120.06072 * 359.97438 * 16 15 14 29 29 H 1.07994 * 119.93873 * 180.27728 * 17 16 15 30 30 H 1.08001 * 119.94296 * 180.02562 * 20 18 17 31 31 H 1.07990 * 120.06760 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9135 -3.6029 -0.8586 12 6 1.5094 -5.0237 0.0397 13 7 2.3763 -5.8153 0.9343 14 6 3.1728 -5.0038 1.5573 15 6 4.1881 -5.4588 2.5326 16 6 5.0175 -4.5313 3.1640 17 6 5.9585 -4.9605 4.0767 18 6 6.0887 -6.3101 4.3580 19 17 7.2796 -6.8438 5.5028 20 6 5.2722 -7.2357 3.7300 21 6 4.3235 -6.8173 2.8203 22 8 2.9907 -3.7064 1.2346 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 1.4639 -5.4703 -0.9535 27 1 0.5106 -4.9145 0.4620 28 1 4.9200 -3.4790 2.9417 29 1 6.5979 -4.2430 4.5693 30 1 5.3778 -8.2871 3.9535 31 1 3.6875 -7.5399 2.3308 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260536950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:52 Heat of formation + Delta-G solvation = -21.461183 kcal Electronic energy + Delta-G solvation = -16769.830633 eV Core-core repulsion = 13848.550780 eV Total energy + Delta-G solvation = -2921.279852 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.17719 -40.11895 -37.50724 -35.58053 -34.64088 -33.44951 -32.14995 -31.58342 -28.41597 -25.47291 -24.42093 -23.61812 -22.55285 -21.24815 -18.75973 -18.54979 -17.55087 -17.39612 -16.71304 -16.33439 -15.85201 -15.52583 -14.70318 -14.60657 -14.53555 -14.37365 -14.13616 -13.71704 -13.28711 -13.08741 -12.88699 -12.61726 -12.58702 -12.42760 -12.39301 -11.90932 -11.77481 -11.54057 -10.99104 -10.64440 -10.43190 -10.13464 -9.50547 -8.25324 -6.35702 -0.45222 0.24340 1.04366 1.28610 1.38903 1.39759 1.52931 2.17419 2.38516 2.63139 2.98407 3.10071 3.66030 3.77467 3.86432 3.97971 4.17131 4.23710 4.31149 4.48987 4.56425 4.59745 4.76796 4.93391 5.04096 5.12151 5.27548 5.32356 5.39137 5.47111 5.62736 5.69829 6.11016 6.60671 6.75963 7.32961 8.86606 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.004204 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.392896 B = 6659.177258 C = 7616.367197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.057 0.943 9 C 0.034 3.966 10 C 0.065 3.935 11 H 0.087 0.913 12 C -0.002 4.002 13 N -0.549 5.549 14 C 0.328 3.672 15 C -0.056 4.056 16 C -0.073 4.073 17 C -0.112 4.112 18 C -0.018 4.018 19 Cl -0.056 7.056 20 C -0.110 4.110 21 C -0.054 4.054 22 O -0.343 6.343 23 H 0.266 0.734 24 H 0.030 0.970 25 H -0.002 1.002 26 H 0.119 0.881 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.160 0.840 30 H 0.168 0.832 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 -13.959 8.023 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.076 0.924 9 C -0.003 4.003 10 C 0.009 3.991 11 H 0.105 0.895 12 C -0.131 4.131 13 N -0.285 5.285 14 C 0.105 3.895 15 C -0.058 4.058 16 C -0.093 4.093 17 C -0.131 4.131 18 C -0.045 4.045 19 Cl -0.027 7.027 20 C -0.128 4.128 21 C -0.073 4.073 22 O -0.246 6.246 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.017 0.983 26 H 0.137 0.863 27 H 0.104 0.896 28 H 0.155 0.845 29 H 0.177 0.823 30 H 0.185 0.815 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.520 -14.540 8.057 20.810 hybrid contribution -0.174 1.874 -0.309 1.908 sum 12.346 -12.665 7.748 19.310 Atomic orbital electron populations 1.70069 1.07652 1.27945 1.51406 1.25899 0.95757 1.03207 0.94535 0.85392 0.79019 0.78737 0.77890 1.18799 1.20041 1.20435 1.21474 0.93359 0.91744 1.50811 0.92425 1.19074 0.93029 0.91584 0.96609 1.24299 0.93252 0.97493 0.84087 0.89467 1.24129 0.98359 0.90522 1.00064 1.74882 1.08872 1.30475 1.14292 1.23908 0.92236 0.80779 0.92561 1.18048 0.95302 0.95067 0.97344 1.21381 0.93339 1.00252 0.94310 1.21167 0.99053 0.94650 0.98193 1.21287 0.93974 0.94302 0.94952 1.98386 1.55484 1.90338 1.58511 1.21241 0.94423 1.01131 0.96015 1.21288 0.96888 0.93525 0.95646 1.87097 1.71317 1.25092 1.41127 0.92563 0.95199 0.98317 0.86297 0.89611 0.84510 0.82272 0.81492 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.54 -30.30 8.96 25.60 0.23 -30.07 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.78 4.71 29.85 0.14 1.92 16 10 C 0.07 2.79 3.68 31.22 0.11 2.90 16 11 H 0.09 3.56 8.14 -2.38 -0.02 3.54 16 12 C 0.00 -0.06 7.69 86.79 0.67 0.61 16 13 N -0.55 -19.59 11.15 -450.92 -5.03 -24.62 16 14 C 0.33 11.86 7.59 87.59 0.66 12.52 16 15 C -0.06 -1.61 5.87 -20.08 -0.12 -1.73 16 16 C -0.07 -1.87 9.67 22.51 0.22 -1.66 16 17 C -0.11 -2.26 9.81 22.26 0.22 -2.04 16 18 C -0.02 -0.33 6.33 22.39 0.14 -0.19 16 19 Cl -0.06 -0.91 28.95 -2.72 -0.08 -0.99 16 20 C -0.11 -1.96 9.81 22.26 0.22 -1.74 16 21 C -0.05 -1.22 9.63 22.51 0.22 -1.00 16 22 O -0.34 -14.77 10.24 -82.03 -0.84 -15.61 16 23 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 24 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 26 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 27 H 0.09 3.19 7.91 -2.39 -0.02 3.17 16 28 H 0.14 3.77 7.77 -2.91 -0.02 3.74 16 29 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.15 3.26 7.71 -2.92 -0.02 3.23 16 Total: -1.00 -64.41 291.81 0.68 -63.73 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.14 Total: 6.55 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 3.17 Total: -19.76 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -4.74 Total: -79.93 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.84 Total: -15.61 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -64.41 0.68 -63.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260536950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.270 kcal (2) G-P(sol) polarization free energy of solvation -64.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds