Wall clock time and date at job start Mon Mar 30 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.92108 * 54.30120 * 10 9 7 12 12 C 1.54811 * 111.04426 * 178.28954 * 10 9 7 13 13 N 1.47658 * 101.97379 * 141.48441 * 12 10 9 14 14 C 1.29662 * 108.45520 * 344.99339 * 13 12 10 15 15 C 1.47957 * 123.08713 * 179.55504 * 14 13 12 16 16 C 1.39521 * 120.11879 * 179.74391 * 15 14 13 17 17 C 1.37936 * 119.87120 * 179.78679 * 16 15 14 18 18 C 1.38488 * 120.12442 * 0.48743 * 17 16 15 19 19 Cl 1.73589 * 119.87751 * 179.76598 * 18 17 16 20 20 C 1.38491 * 120.24493 * 359.74095 * 18 17 16 21 21 C 1.37928 * 120.12638 * 0.02562 * 20 18 17 22 22 O 1.34943 * 113.82235 * 359.56744 * 14 13 12 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09006 * 110.92647 * 259.68511 * 12 10 9 27 27 H 1.08994 * 110.92708 * 23.33345 * 12 10 9 28 28 H 1.07996 * 120.06593 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.93805 * 180.22526 * 17 16 15 30 30 H 1.08001 * 119.93114 * 179.97438 * 20 18 17 31 31 H 1.07995 * 120.06114 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9499 -3.5718 0.8274 12 6 1.5089 -5.0231 0.0437 13 7 2.3366 -5.8480 -0.8590 14 6 3.1055 -5.0608 -1.5447 15 6 4.0785 -5.5523 -2.5452 16 6 4.8722 -4.6488 -3.2525 17 6 5.7808 -5.1129 -4.1809 18 6 5.8987 -6.4721 -4.4187 19 17 7.0398 -7.0487 -5.5929 20 6 5.1099 -7.3730 -3.7229 21 6 4.2015 -6.9205 -2.7889 22 8 2.9371 -3.7521 -1.2619 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 1.5067 -5.4328 1.0538 27 1 0.4926 -4.9281 -0.3385 28 1 4.7777 -3.5883 -3.0713 29 1 6.3983 -4.4147 -4.7264 30 1 5.2058 -8.4319 -3.9127 31 1 3.5867 -7.6240 -2.2472 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260536952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:54 Heat of formation + Delta-G solvation = -5.424131 kcal Electronic energy + Delta-G solvation = -16789.398944 eV Core-core repulsion = 13868.814510 eV Total energy + Delta-G solvation = -2920.584434 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.79196 -39.18155 -36.70486 -33.94839 -33.24533 -31.97626 -31.26257 -29.98940 -26.43817 -23.68770 -23.29396 -22.50346 -21.15760 -20.01784 -17.59622 -17.09276 -16.37840 -16.01969 -15.39927 -14.81322 -14.38845 -13.77805 -13.72926 -13.63504 -13.54203 -13.00158 -12.62162 -12.17280 -12.03599 -11.76228 -11.55365 -11.30982 -11.17965 -11.00436 -10.66588 -10.39850 -10.14995 -9.85595 -9.27524 -9.20752 -8.65614 -8.43643 -8.37987 -6.45210 -4.15329 0.53338 1.10431 1.85717 2.47013 3.40452 3.42197 3.44308 3.61089 3.61558 4.26199 4.48379 4.64702 4.66877 5.08618 5.09406 5.20050 5.33180 5.42778 5.46156 5.59490 5.72457 5.76690 5.99139 6.08539 6.10308 6.23730 6.34843 6.51332 6.70250 7.02722 7.20869 7.95422 8.04784 8.35406 8.76513 9.55425 10.95217 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.004169 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.780027 B = 6714.167891 C = 7647.518768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.599 4.599 8 H 0.053 0.947 9 C 0.014 3.986 10 C 0.070 3.930 11 H 0.083 0.917 12 C -0.008 4.008 13 N -0.545 5.545 14 C 0.331 3.669 15 C -0.030 4.030 16 C -0.064 4.064 17 C -0.117 4.117 18 C -0.020 4.020 19 Cl -0.071 7.071 20 C -0.120 4.120 21 C -0.057 4.057 22 O -0.320 6.320 23 H 0.268 0.732 24 H 0.031 0.969 25 H 0.020 0.980 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.139 -13.742 -7.421 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.637 4.637 8 H 0.071 0.929 9 C -0.023 4.023 10 C 0.014 3.986 11 H 0.101 0.899 12 C -0.138 4.138 13 N -0.281 5.281 14 C 0.108 3.892 15 C -0.031 4.031 16 C -0.084 4.084 17 C -0.135 4.135 18 C -0.047 4.047 19 Cl -0.042 7.042 20 C -0.138 4.138 21 C -0.077 4.077 22 O -0.223 6.223 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.038 0.962 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.166 0.834 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.802 -12.771 -7.426 18.301 hybrid contribution 0.173 -0.977 0.135 1.001 sum 10.976 -13.748 -7.291 19.043 Atomic orbital electron populations 1.70812 1.06883 1.30502 1.46437 1.25877 0.96472 1.02827 0.93550 0.83517 0.74892 0.75136 0.76629 1.20696 1.21355 1.21321 1.21923 0.94443 0.91376 1.55994 0.92914 1.19384 0.93398 0.92104 0.97400 1.24353 0.94427 0.97027 0.82821 0.89941 1.24172 0.99240 0.91573 0.98778 1.74912 1.09625 1.30986 1.12593 1.23334 0.91500 0.81978 0.92348 1.17926 0.95667 0.93537 0.96004 1.21424 0.92815 1.00997 0.93155 1.21010 0.99738 0.93556 0.99213 1.21151 0.94783 0.94166 0.94611 1.98373 1.59504 1.89138 1.57215 1.20974 0.96208 0.99914 0.96737 1.21215 0.96429 0.94326 0.95714 1.87145 1.73364 1.22411 1.39348 0.92211 0.95079 0.96220 0.88691 0.89167 0.83406 0.84204 0.84299 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.48 13.65 55.43 0.76 -26.72 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 3 Si 1.07 25.03 29.90 -169.99 -5.08 19.95 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.60 -16.84 9.02 -34.44 -0.31 -17.15 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.01 0.35 4.00 -27.88 -0.11 0.24 16 10 C 0.07 1.49 3.65 -25.78 -0.09 1.39 16 11 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 12 C -0.01 -0.15 7.69 -2.45 -0.02 -0.17 16 13 N -0.54 -9.80 11.15 -57.62 -0.64 -10.44 16 14 C 0.33 5.98 7.59 -14.49 -0.11 5.87 16 15 C -0.03 -0.44 5.87 -104.96 -0.62 -1.05 16 16 C -0.06 -0.84 9.67 -39.21 -0.38 -1.22 16 17 C -0.12 -1.28 9.81 -39.60 -0.39 -1.66 16 18 C -0.02 -0.21 6.33 -39.40 -0.25 -0.46 16 19 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.17 16 20 C -0.12 -1.23 9.81 -39.60 -0.39 -1.61 16 21 C -0.06 -0.69 9.63 -39.22 -0.38 -1.07 16 22 O -0.32 -6.80 10.31 -16.55 -0.17 -6.97 16 23 H 0.27 7.99 7.22 -40.82 -0.29 7.70 16 24 H 0.03 0.78 8.01 -51.93 -0.42 0.37 16 25 H 0.02 0.52 8.01 -51.93 -0.42 0.11 16 26 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.09 1.63 7.91 -51.93 -0.41 1.22 16 28 H 0.15 2.00 7.77 -52.49 -0.41 1.59 16 29 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.15 1.69 7.71 -52.49 -0.40 1.29 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -30.82 290.59 -8.65 -39.47 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -3.24 Total: -0.98 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -3.14 Total: -16.51 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.11 Total: -37.16 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.17 Total: -6.97 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.82 -8.65 -39.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260536952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.043 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds