Wall clock time and date at job start Mon Mar 30 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.92108 * 54.30120 * 10 9 7 12 12 C 1.54811 * 111.04426 * 178.28954 * 10 9 7 13 13 N 1.47658 * 101.97379 * 141.48441 * 12 10 9 14 14 C 1.29662 * 108.45520 * 344.99339 * 13 12 10 15 15 C 1.47957 * 123.08713 * 179.55504 * 14 13 12 16 16 C 1.39521 * 120.11879 * 179.74391 * 15 14 13 17 17 C 1.37936 * 119.87120 * 179.78679 * 16 15 14 18 18 C 1.38488 * 120.12442 * 0.48743 * 17 16 15 19 19 Cl 1.73589 * 119.87751 * 179.76598 * 18 17 16 20 20 C 1.38491 * 120.24493 * 359.74095 * 18 17 16 21 21 C 1.37928 * 120.12638 * 0.02562 * 20 18 17 22 22 O 1.34943 * 113.82235 * 359.56744 * 14 13 12 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09006 * 110.92647 * 259.68511 * 12 10 9 27 27 H 1.08994 * 110.92708 * 23.33345 * 12 10 9 28 28 H 1.07996 * 120.06593 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.93805 * 180.22526 * 17 16 15 30 30 H 1.08001 * 119.93114 * 179.97438 * 20 18 17 31 31 H 1.07995 * 120.06114 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9499 -3.5718 0.8274 12 6 1.5089 -5.0231 0.0437 13 7 2.3366 -5.8480 -0.8590 14 6 3.1055 -5.0608 -1.5447 15 6 4.0785 -5.5523 -2.5452 16 6 4.8722 -4.6488 -3.2525 17 6 5.7808 -5.1129 -4.1809 18 6 5.8987 -6.4721 -4.4187 19 17 7.0398 -7.0487 -5.5929 20 6 5.1099 -7.3730 -3.7229 21 6 4.2015 -6.9205 -2.7889 22 8 2.9371 -3.7521 -1.2619 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 1.5067 -5.4328 1.0538 27 1 0.4926 -4.9281 -0.3385 28 1 4.7777 -3.5883 -3.0713 29 1 6.3983 -4.4147 -4.7264 30 1 5.2058 -8.4319 -3.9127 31 1 3.5867 -7.6240 -2.2472 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260536952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:54 Heat of formation + Delta-G solvation = -25.878174 kcal Electronic energy + Delta-G solvation = -16790.285898 eV Core-core repulsion = 13868.814510 eV Total energy + Delta-G solvation = -2921.471387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.28086 -40.16499 -37.53739 -35.97399 -34.73750 -33.44731 -32.18905 -31.48907 -28.15259 -25.41239 -24.47572 -23.72099 -22.79453 -21.35373 -19.13995 -18.69706 -17.68348 -17.46001 -16.43862 -16.24641 -15.64646 -15.61548 -15.06142 -14.69696 -14.61436 -14.55071 -14.21610 -13.84278 -13.45297 -12.95893 -12.89355 -12.67623 -12.53959 -12.48390 -12.13991 -11.93612 -11.86084 -11.50269 -10.71490 -10.61627 -10.52500 -10.17150 -9.56132 -8.74121 -6.45234 -0.50273 0.20700 1.01581 1.21353 1.51656 1.59545 1.79442 2.07901 2.53481 2.58776 2.89141 3.11682 3.53547 3.73402 3.82874 3.83895 4.09591 4.16106 4.23165 4.39731 4.43635 4.55386 4.62661 4.87844 4.91574 5.01265 5.08590 5.20912 5.28351 5.32359 5.58880 5.85462 6.09095 6.46916 6.53414 7.34272 8.67084 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.004169 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.780027 B = 6714.167891 C = 7647.518768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.034 4.034 3 Si 1.117 2.883 4 H -0.282 1.282 5 H -0.266 1.266 6 H -0.272 1.272 7 C -0.614 4.614 8 H 0.049 0.951 9 C 0.018 3.982 10 C 0.071 3.929 11 H 0.086 0.914 12 C -0.002 4.002 13 N -0.547 5.547 14 C 0.328 3.672 15 C -0.058 4.058 16 C -0.073 4.073 17 C -0.112 4.112 18 C -0.017 4.017 19 Cl -0.055 7.055 20 C -0.109 4.109 21 C -0.053 4.053 22 O -0.344 6.344 23 H 0.256 0.744 24 H 0.026 0.974 25 H -0.005 1.005 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.136 0.864 29 H 0.161 0.839 30 H 0.168 0.832 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.030 -14.773 -8.231 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.232 4.232 3 Si 0.938 3.062 4 H -0.207 1.207 5 H -0.191 1.191 6 H -0.197 1.197 7 C -0.652 4.652 8 H 0.068 0.932 9 C -0.019 4.019 10 C 0.014 3.986 11 H 0.104 0.896 12 C -0.131 4.131 13 N -0.283 5.283 14 C 0.106 3.894 15 C -0.059 4.059 16 C -0.093 4.093 17 C -0.130 4.130 18 C -0.044 4.044 19 Cl -0.026 7.026 20 C -0.128 4.128 21 C -0.073 4.073 22 O -0.247 6.247 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.013 0.987 26 H 0.138 0.862 27 H 0.105 0.895 28 H 0.154 0.846 29 H 0.178 0.822 30 H 0.186 0.814 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.699 -13.845 -8.236 20.513 hybrid contribution -0.347 -0.749 0.290 0.875 sum 12.352 -14.594 -7.946 20.705 Atomic orbital electron populations 1.70936 1.07877 1.29896 1.48494 1.27406 0.96539 1.06745 0.92504 0.82938 0.74169 0.71042 0.78077 1.20710 1.19117 1.19682 1.22297 0.94575 0.92857 1.55426 0.93228 1.19228 0.93790 0.93006 0.95868 1.24130 0.94044 0.97131 0.83254 0.89605 1.24153 0.98698 0.89905 1.00325 1.74906 1.09988 1.30470 1.12967 1.23951 0.92006 0.80618 0.92821 1.18041 0.96306 0.94916 0.96663 1.21373 0.93576 1.00352 0.93989 1.21175 0.99062 0.94358 0.98405 1.21294 0.94611 0.94089 0.94415 1.98388 1.58805 1.88898 1.56471 1.21248 0.94831 1.01335 0.95345 1.21284 0.96803 0.93153 0.96046 1.87098 1.73603 1.24667 1.39379 0.93446 0.95563 0.98686 0.86184 0.89526 0.84622 0.82190 0.81405 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.57 13.65 21.45 0.29 -57.27 16 2 C -0.03 -1.98 5.46 84.65 0.46 -1.52 16 3 Si 1.12 50.08 29.90 68.60 2.05 52.13 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.61 -35.12 9.02 25.60 0.23 -34.88 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 9 C 0.02 0.94 4.00 29.85 0.12 1.06 16 10 C 0.07 3.06 3.65 31.21 0.11 3.18 16 11 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 12 C 0.00 -0.06 7.69 86.78 0.67 0.61 16 13 N -0.55 -19.46 11.15 -450.76 -5.03 -24.49 16 14 C 0.33 11.90 7.59 87.59 0.66 12.57 16 15 C -0.06 -1.66 5.87 -20.08 -0.12 -1.77 16 16 C -0.07 -1.88 9.67 22.51 0.22 -1.66 16 17 C -0.11 -2.23 9.81 22.26 0.22 -2.01 16 18 C -0.02 -0.30 6.33 22.39 0.14 -0.16 16 19 Cl -0.05 -0.87 28.95 -2.72 -0.08 -0.95 16 20 C -0.11 -1.92 9.81 22.26 0.22 -1.70 16 21 C -0.05 -1.19 9.63 22.51 0.22 -0.98 16 22 O -0.34 -14.93 10.31 -82.13 -0.85 -15.78 16 23 H 0.26 15.85 7.22 -92.71 -0.67 15.18 16 24 H 0.03 1.37 8.01 -2.39 -0.02 1.35 16 25 H -0.01 -0.29 8.01 -2.38 -0.02 -0.31 16 26 H 0.12 3.68 8.14 -2.38 -0.02 3.66 16 27 H 0.09 3.17 7.91 -2.39 -0.02 3.15 16 28 H 0.14 3.76 7.77 -2.91 -0.02 3.74 16 29 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.15 3.23 7.71 -2.91 -0.02 3.21 16 Total: -1.00 -66.52 290.59 0.79 -65.73 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.24 Total: 7.89 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 3.15 Total: -27.28 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -4.73 Total: -81.76 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.85 Total: -15.78 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -66.52 0.79 -65.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260536952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.855 kcal (2) G-P(sol) polarization free energy of solvation -66.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds