Wall clock time and date at job start Mon Mar 30 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00090 * 2 1 4 4 H 1.48510 * 109.47047 * 269.99985 * 3 2 1 5 5 H 1.48496 * 109.47337 * 29.99830 * 3 2 1 6 6 H 1.48494 * 109.47267 * 149.99884 * 3 2 1 7 7 C 1.37878 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00189 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00043 * 180.02562 * 7 2 1 10 10 C 1.50693 * 109.47137 * 179.97438 * 9 7 2 11 11 N 1.28635 * 122.94478 * 359.97438 * 10 9 7 12 12 C 1.47596 * 108.55172 * 179.58883 * 11 10 9 13 13 C 1.54848 * 101.89426 * 345.04776 * 12 11 10 14 14 H 1.09005 * 111.07617 * 265.21985 * 13 12 11 15 15 C 1.50702 * 111.07725 * 141.22759 * 13 12 11 16 16 C 1.38237 * 120.00143 * 265.02113 * 15 13 12 17 17 C 1.38221 * 120.01233 * 179.97438 * 16 15 13 18 18 C 1.38263 * 120.02714 * 359.97438 * 17 16 15 19 19 C 1.38195 * 120.01003 * 359.97438 * 18 17 16 20 20 C 1.38326 * 120.01026 * 84.99713 * 15 13 12 21 21 Cl 1.73600 * 120.01508 * 0.02562 * 20 15 13 22 22 O 1.34600 * 122.93550 * 179.97438 * 10 9 7 23 23 H 0.96998 * 120.00130 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46683 * 59.99628 * 9 7 2 25 25 H 1.08996 * 109.47056 * 299.99870 * 9 7 2 26 26 H 1.09000 * 110.94484 * 226.89855 * 12 11 10 27 27 H 1.09003 * 110.97773 * 103.21638 * 12 11 10 28 28 H 1.08003 * 119.99824 * 359.95431 * 16 15 13 29 29 H 1.08002 * 119.98422 * 180.02562 * 17 16 15 30 30 H 1.07999 * 119.99487 * 180.27557 * 18 17 16 31 31 H 1.08002 * 120.00463 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0138 -2.6149 0.0023 11 7 3.2292 -3.6343 0.0031 12 6 4.0515 -4.8599 -0.0059 13 6 5.4427 -4.3078 -0.4029 14 1 5.6044 -4.3886 -1.4779 15 6 6.5400 -5.0037 0.3606 16 6 7.0345 -4.4443 1.5240 17 6 8.0405 -5.0826 2.2247 18 6 8.5524 -6.2811 1.7629 19 6 8.0580 -6.8418 0.6006 20 6 7.0520 -6.2024 -0.1022 21 17 6.4315 -6.9055 -1.5632 22 8 5.3228 -2.9284 0.0025 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.8752 -0.6806 -0.8888 26 1 3.6868 -5.5684 -0.7497 27 1 4.0814 -5.3171 0.9831 28 1 6.6351 -3.5082 1.8854 29 1 8.4263 -4.6454 3.1338 30 1 9.3353 -6.7817 2.3133 31 1 8.4582 -7.7777 0.2397 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260600176.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:01 Heat of formation + Delta-G solvation = -11.296181 kcal Electronic energy + Delta-G solvation = -17073.887348 eV Core-core repulsion = 14153.048283 eV Total energy + Delta-G solvation = -2920.839065 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.41409 -40.12232 -37.52025 -35.63487 -34.46955 -33.86795 -31.89871 -31.73847 -28.78153 -25.34610 -24.69967 -23.73620 -22.38972 -20.98750 -18.86326 -18.54908 -17.87452 -17.19560 -16.67470 -16.28757 -15.99789 -15.50877 -14.86889 -14.78047 -14.62114 -14.48615 -14.17352 -13.68240 -13.49371 -13.04941 -12.76834 -12.60966 -12.50804 -12.44369 -12.28795 -11.82862 -11.80528 -11.64460 -10.97700 -10.75493 -10.11722 -9.92531 -9.72430 -8.21883 -6.29149 0.03105 0.19692 1.03438 1.20695 1.43484 1.45176 1.55624 2.12981 2.40646 2.56751 3.10918 3.20951 3.36766 3.71900 3.74090 3.94696 4.07961 4.29228 4.33536 4.36265 4.53347 4.57780 4.72705 4.87052 4.89125 5.04122 5.17550 5.28140 5.34687 5.42692 5.51200 5.77827 6.32330 6.82255 6.98419 7.32488 8.94367 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.033159 B = 0.004649 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.206859 B = 6020.857618 C = 6518.178572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.238 1.238 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.054 3.946 10 C 0.319 3.681 11 N -0.559 5.559 12 C 0.004 3.996 13 C 0.089 3.911 14 H 0.104 0.896 15 C -0.093 4.093 16 C -0.104 4.104 17 C -0.110 4.110 18 C -0.096 4.096 19 C -0.108 4.108 20 C -0.037 4.037 21 Cl -0.070 7.070 22 O -0.346 6.346 23 H 0.268 0.732 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.124 0.876 29 H 0.157 0.843 30 H 0.171 0.829 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.794 -12.794 2.460 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.161 1.161 7 C -0.563 4.563 8 H 0.071 0.929 9 C 0.017 3.983 10 C 0.094 3.906 11 N -0.294 5.294 12 C -0.126 4.126 13 C 0.031 3.969 14 H 0.121 0.879 15 C -0.094 4.094 16 C -0.122 4.122 17 C -0.128 4.128 18 C -0.114 4.114 19 C -0.127 4.127 20 C -0.063 4.063 21 Cl -0.041 7.041 22 O -0.250 6.250 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.106 0.894 28 H 0.142 0.858 29 H 0.175 0.825 30 H 0.188 0.812 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 20.915 -12.940 2.385 24.710 hybrid contribution 0.105 0.520 -0.411 0.671 sum 21.020 -12.420 1.973 24.495 Atomic orbital electron populations 1.70053 1.08406 1.28216 1.52218 1.25903 0.95632 1.03158 0.94027 0.85725 0.79803 0.78095 0.79487 1.18895 1.20995 1.16061 1.21143 0.89795 0.94589 1.50818 0.92865 1.18453 0.95550 0.84227 1.00104 1.25948 0.78675 0.98417 0.87558 1.75001 1.30746 0.98729 1.24884 1.24152 0.88927 0.96205 1.03270 1.22869 0.95615 0.79183 0.99186 0.87881 1.19297 0.97987 0.94965 0.97198 1.21133 0.97203 1.00299 0.93593 1.21615 0.95208 0.95540 1.00420 1.21614 0.99732 0.95011 0.95041 1.21375 0.94839 1.01056 0.95383 1.20789 0.99405 0.94974 0.91161 1.98376 1.86888 1.83299 1.35506 1.86931 1.26106 1.29332 1.82644 0.92349 0.91670 0.91817 0.87684 0.89377 0.85766 0.82524 0.81189 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 2 C 0.01 0.56 5.47 84.65 0.46 1.02 16 3 Si 0.95 42.43 27.47 68.60 1.88 44.31 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 7 C -0.53 -30.67 9.51 25.60 0.24 -30.43 16 8 H 0.05 3.54 7.01 -2.91 -0.02 3.52 16 9 C 0.05 2.58 4.67 29.10 0.14 2.71 16 10 C 0.32 14.22 7.68 88.57 0.68 14.90 16 11 N -0.56 -25.97 10.20 -449.44 -4.59 -30.56 16 12 C 0.00 0.13 7.68 86.80 0.67 0.79 16 13 C 0.09 2.86 3.39 30.48 0.10 2.97 16 14 H 0.10 3.20 7.40 -2.38 -0.02 3.19 16 15 C -0.09 -2.46 5.09 -19.84 -0.10 -2.56 16 16 C -0.10 -2.50 9.40 22.27 0.21 -2.29 16 17 C -0.11 -1.81 10.05 22.27 0.22 -1.59 16 18 C -0.10 -1.25 10.05 22.27 0.22 -1.03 16 19 C -0.11 -1.71 9.83 22.29 0.22 -1.49 16 20 C -0.04 -0.80 6.31 22.32 0.14 -0.66 16 21 Cl -0.07 -1.52 27.54 -2.72 -0.07 -1.60 16 22 O -0.35 -13.09 9.66 -78.65 -0.76 -13.85 16 23 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 24 H 0.07 2.90 7.20 -2.38 -0.02 2.88 16 25 H 0.06 2.80 7.57 -2.39 -0.02 2.79 16 26 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 27 H 0.09 2.99 7.91 -2.39 -0.02 2.97 16 28 H 0.12 3.31 7.25 -2.91 -0.02 3.29 16 29 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 31 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -70.09 283.66 1.06 -69.03 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.09 Total: 9.78 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 3.21 Total: -17.64 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -4.29 Total: -90.03 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.76 Total: -13.85 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.31 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.60 kcal Total: -70.09 1.06 -69.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600176.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.736 kcal (2) G-P(sol) polarization free energy of solvation -70.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds