Wall clock time and date at job start Mon Mar 30 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48502 * 109.47095 * 239.99949 * 3 2 1 5 5 H 1.48501 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47413 * 119.99837 * 3 2 1 7 7 C 1.37882 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47364 * 180.02562 * 9 7 2 11 11 N 1.28638 * 122.93710 * 0.02562 * 10 9 7 12 12 C 1.47597 * 108.54903 * 180.40678 * 11 10 9 13 13 C 1.54853 * 101.89306 * 14.95122 * 12 11 10 14 14 H 1.09008 * 111.11408 * 94.75469 * 13 12 11 15 15 C 1.50702 * 111.07754 * 218.77154 * 13 12 11 16 16 C 1.38237 * 120.00143 * 88.28958 * 15 13 12 17 17 C 1.38221 * 120.01233 * 179.97438 * 16 15 13 18 18 C 1.38263 * 120.02714 * 359.97438 * 17 16 15 19 19 C 1.38195 * 120.01003 * 359.97438 * 18 17 16 20 20 C 1.38326 * 120.01026 * 268.26558 * 15 13 12 21 21 Cl 1.73599 * 120.01212 * 0.04448 * 20 15 13 22 22 O 1.34590 * 122.93933 * 179.97438 * 10 9 7 23 23 H 0.96996 * 119.99404 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47131 * 59.99830 * 9 7 2 25 25 H 1.09009 * 109.47386 * 300.00388 * 9 7 2 26 26 H 1.09000 * 110.95188 * 256.80161 * 12 11 10 27 27 H 1.08999 * 110.94545 * 133.10014 * 12 11 10 28 28 H 1.08003 * 119.99804 * 359.97438 * 16 15 13 29 29 H 1.08002 * 119.98422 * 180.02562 * 17 16 15 30 30 H 1.07999 * 119.99487 * 180.27557 * 18 17 16 31 31 H 1.07996 * 120.00042 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2303 -3.6446 0.0027 11 7 3.5054 -3.4748 0.0031 12 6 4.1556 -4.7998 -0.0059 13 6 2.9817 -5.7287 -0.4021 14 1 2.9695 -5.9094 -1.4770 15 6 3.0360 -7.0266 0.3618 16 6 2.4179 -7.1299 1.5940 17 6 2.4671 -8.3204 2.2945 18 6 3.1340 -9.4088 1.7632 19 6 3.7513 -9.3070 0.5310 20 6 3.7038 -8.1150 -0.1701 21 17 4.4807 -7.9858 -1.7171 22 8 1.8472 -4.9349 0.0044 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8920 26 1 4.5365 -5.0537 0.9833 27 1 4.9512 -4.8384 -0.7499 28 1 1.8964 -6.2802 2.0094 29 1 1.9836 -8.4007 3.2570 30 1 3.1683 -10.3400 2.3090 31 1 4.2719 -10.1573 0.1160 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260600179.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:03 Heat of formation + Delta-G solvation = 4.863293 kcal Electronic energy + Delta-G solvation = -17030.779482 eV Core-core repulsion = 14110.641145 eV Total energy + Delta-G solvation = -2920.138337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.90471 -39.13977 -36.62774 -33.75041 -32.85799 -32.36315 -30.92276 -29.75445 -27.00544 -23.80230 -23.25686 -22.84060 -21.28672 -19.39814 -17.53316 -16.59513 -16.16110 -15.94548 -15.31886 -15.00197 -14.34693 -14.27121 -13.96488 -13.74562 -12.97693 -12.74779 -12.37529 -12.15620 -11.78986 -11.72548 -11.56420 -11.44612 -11.24434 -10.86179 -10.75973 -10.59491 -9.98929 -9.71144 -9.20161 -8.99788 -8.74611 -8.55693 -8.27076 -6.05008 -4.05083 0.90619 1.05333 1.92843 2.97633 3.37791 3.38574 3.40973 3.45642 3.72545 4.44582 4.51524 4.65293 4.75943 4.78557 5.07273 5.11178 5.27424 5.33480 5.37771 5.45619 5.72410 5.78575 5.91803 5.99238 6.14660 6.21922 6.51809 6.59425 7.11511 7.27371 7.33909 7.99391 8.15190 8.67186 9.06698 9.58976 11.07246 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035023 B = 0.004405 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.285933 B = 6354.853316 C = 6792.198521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.081 0.919 9 C 0.085 3.915 10 C 0.323 3.677 11 N -0.533 5.533 12 C 0.002 3.998 13 C 0.081 3.919 14 H 0.101 0.899 15 C -0.069 4.069 16 C -0.084 4.084 17 C -0.114 4.114 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.028 4.028 21 Cl -0.067 7.067 22 O -0.345 6.345 23 H 0.263 0.737 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 -19.220 1.769 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.099 0.901 9 C 0.047 3.953 10 C 0.100 3.900 11 N -0.268 5.268 12 C -0.127 4.127 13 C 0.023 3.977 14 H 0.118 0.882 15 C -0.070 4.070 16 C -0.102 4.102 17 C -0.132 4.132 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.054 4.054 21 Cl -0.038 7.038 22 O -0.250 6.250 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.157 0.843 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.499 -18.583 1.684 19.759 hybrid contribution 0.250 0.026 -0.218 0.332 sum 6.749 -18.557 1.466 19.800 Atomic orbital electron populations 1.69953 1.06058 1.27123 1.50848 1.24999 0.94891 0.99454 0.95203 0.86451 0.79310 0.82216 0.78820 1.20141 1.21429 1.20133 1.21137 0.94501 0.88599 1.50566 0.90053 1.18221 0.91298 0.85935 0.99817 1.27009 0.93512 0.83737 0.85787 1.74997 1.05736 1.19511 1.26573 1.24087 0.97659 0.88722 1.02281 1.22848 0.86924 0.89447 0.98517 0.88166 1.19449 0.98520 0.93434 0.95635 1.21112 0.97425 0.98657 0.92988 1.21300 0.98882 0.92775 1.00247 1.21142 0.97462 0.99131 0.95079 1.20984 1.00792 0.96083 0.95172 1.20668 1.00595 0.95182 0.88983 1.98374 1.79347 1.98244 1.27802 1.87009 1.37555 1.17948 1.82523 0.92758 0.92856 0.92921 0.90184 0.88949 0.84268 0.85085 0.85031 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.31 8.95 -34.44 -0.31 -14.62 16 8 H 0.08 2.32 6.77 -52.49 -0.36 1.96 16 9 C 0.08 2.17 5.60 -29.04 -0.16 2.01 16 10 C 0.32 7.35 7.68 -13.62 -0.10 7.25 16 11 N -0.53 -11.99 10.20 -56.99 -0.58 -12.57 16 12 C 0.00 0.04 7.68 -2.46 -0.02 0.02 16 13 C 0.08 1.35 3.52 -26.91 -0.09 1.26 16 14 H 0.10 1.63 7.10 -51.92 -0.37 1.26 16 15 C -0.07 -0.98 5.06 -104.59 -0.53 -1.51 16 16 C -0.08 -1.10 9.39 -39.59 -0.37 -1.48 16 17 C -0.11 -1.17 10.05 -39.58 -0.40 -1.57 16 18 C -0.11 -0.99 10.05 -39.59 -0.40 -1.39 16 19 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 20 C -0.03 -0.34 6.31 -39.50 -0.25 -0.59 16 21 Cl -0.07 -0.79 27.39 -51.86 -1.42 -2.21 16 22 O -0.35 -6.90 9.81 -15.55 -0.15 -7.06 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 25 H 0.05 1.38 8.14 -51.92 -0.42 0.96 16 26 H 0.08 1.34 7.91 -51.93 -0.41 0.93 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 28 H 0.14 1.97 7.39 -52.48 -0.39 1.58 16 29 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 287.20 15.07 4.33 4.33 Total: -1.00 -29.97 287.20 -8.43 -38.40 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -3.19 Total: -1.55 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -3.12 Total: -10.66 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.15 Total: -38.05 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.15 Total: -7.06 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.42 Total: -2.21 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.97 -8.43 -38.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600179.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.260 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds