Wall clock time and date at job start Mon Mar 30 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48502 * 109.47095 * 239.99949 * 3 2 1 5 5 H 1.48501 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47413 * 119.99837 * 3 2 1 7 7 C 1.37882 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47364 * 180.02562 * 9 7 2 11 11 N 1.28638 * 122.93710 * 0.02562 * 10 9 7 12 12 C 1.47597 * 108.54903 * 180.40678 * 11 10 9 13 13 C 1.54853 * 101.89306 * 14.95122 * 12 11 10 14 14 H 1.09008 * 111.11408 * 94.75469 * 13 12 11 15 15 C 1.50702 * 111.07754 * 218.77154 * 13 12 11 16 16 C 1.38237 * 120.00143 * 88.28958 * 15 13 12 17 17 C 1.38221 * 120.01233 * 179.97438 * 16 15 13 18 18 C 1.38263 * 120.02714 * 359.97438 * 17 16 15 19 19 C 1.38195 * 120.01003 * 359.97438 * 18 17 16 20 20 C 1.38326 * 120.01026 * 268.26558 * 15 13 12 21 21 Cl 1.73599 * 120.01212 * 0.04448 * 20 15 13 22 22 O 1.34590 * 122.93933 * 179.97438 * 10 9 7 23 23 H 0.96996 * 119.99404 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47131 * 59.99830 * 9 7 2 25 25 H 1.09009 * 109.47386 * 300.00388 * 9 7 2 26 26 H 1.09000 * 110.95188 * 256.80161 * 12 11 10 27 27 H 1.08999 * 110.94545 * 133.10014 * 12 11 10 28 28 H 1.08003 * 119.99804 * 359.97438 * 16 15 13 29 29 H 1.08002 * 119.98422 * 180.02562 * 17 16 15 30 30 H 1.07999 * 119.99487 * 180.27557 * 18 17 16 31 31 H 1.07996 * 120.00042 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2303 -3.6446 0.0027 11 7 3.5054 -3.4748 0.0031 12 6 4.1556 -4.7998 -0.0059 13 6 2.9817 -5.7287 -0.4021 14 1 2.9695 -5.9094 -1.4770 15 6 3.0360 -7.0266 0.3618 16 6 2.4179 -7.1299 1.5940 17 6 2.4671 -8.3204 2.2945 18 6 3.1340 -9.4088 1.7632 19 6 3.7513 -9.3070 0.5310 20 6 3.7038 -8.1150 -0.1701 21 17 4.4807 -7.9858 -1.7171 22 8 1.8472 -4.9349 0.0044 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8920 26 1 4.5365 -5.0537 0.9833 27 1 4.9512 -4.8384 -0.7499 28 1 1.8964 -6.2802 2.0094 29 1 1.9836 -8.4007 3.2570 30 1 3.1683 -10.3400 2.3090 31 1 4.2719 -10.1573 0.1160 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260600179.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:03 Heat of formation + Delta-G solvation = -14.655449 kcal Electronic energy + Delta-G solvation = -17031.625878 eV Core-core repulsion = 14110.641145 eV Total energy + Delta-G solvation = -2920.984734 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.38838 -40.12271 -37.52675 -35.67589 -34.45221 -33.80875 -31.78314 -31.43783 -28.55330 -25.64049 -24.71348 -23.76526 -22.40743 -21.09167 -18.57732 -18.33453 -17.83666 -17.26580 -16.72188 -16.25147 -16.04348 -15.47829 -14.86321 -14.77129 -14.51099 -14.31188 -14.09788 -13.57393 -13.43204 -12.98002 -12.78740 -12.64530 -12.58420 -12.51969 -12.31476 -11.96283 -11.80309 -11.56591 -10.99248 -10.62285 -10.05990 -9.92786 -9.72907 -8.21178 -6.28699 0.02234 0.18741 1.02621 1.23373 1.44925 1.48057 1.56126 2.16472 2.47846 2.59225 3.14820 3.23624 3.37556 3.70868 3.75991 3.96139 4.08456 4.30759 4.34021 4.36726 4.55504 4.58694 4.84867 4.87513 5.11846 5.17054 5.22762 5.33839 5.35790 5.43035 5.77128 5.80688 6.06210 6.81635 6.97502 7.39376 8.91535 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035023 B = 0.004405 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.285933 B = 6354.853316 C = 6792.198521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.089 3.911 10 C 0.318 3.682 11 N -0.557 5.557 12 C 0.005 3.995 13 C 0.085 3.915 14 H 0.102 0.898 15 C -0.093 4.093 16 C -0.104 4.104 17 C -0.110 4.110 18 C -0.095 4.095 19 C -0.107 4.107 20 C -0.036 4.036 21 Cl -0.068 7.068 22 O -0.352 6.352 23 H 0.267 0.733 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.156 0.844 30 H 0.172 0.828 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.381 -21.049 2.396 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.052 3.948 10 C 0.094 3.906 11 N -0.293 5.293 12 C -0.124 4.124 13 C 0.028 3.972 14 H 0.119 0.881 15 C -0.094 4.094 16 C -0.123 4.123 17 C -0.128 4.128 18 C -0.113 4.113 19 C -0.126 4.126 20 C -0.062 4.062 21 Cl -0.039 7.039 22 O -0.256 6.256 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.108 0.892 27 H 0.127 0.873 28 H 0.137 0.863 29 H 0.174 0.826 30 H 0.189 0.811 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.791 -20.434 2.309 21.990 hybrid contribution -0.128 0.443 -0.387 0.602 sum 7.663 -19.991 1.922 21.495 Atomic orbital electron populations 1.70056 1.07433 1.28184 1.51336 1.25839 0.95754 1.02893 0.94580 0.85427 0.78157 0.77992 0.78989 1.19600 1.20455 1.19543 1.21355 0.94344 0.89898 1.50889 0.90766 1.17909 0.91557 0.86945 0.98410 1.26312 0.93152 0.84204 0.86952 1.74888 1.05848 1.22874 1.25670 1.24150 0.98077 0.86829 1.03388 1.22938 0.85001 0.90166 0.99132 0.88082 1.19293 1.01035 0.92793 0.96286 1.21095 0.98288 0.99570 0.93339 1.21604 0.98489 0.91828 1.00881 1.21616 0.95182 0.99988 0.94484 1.21385 1.00203 0.95769 0.95208 1.20795 1.00707 0.95500 0.89223 1.98372 1.79309 1.98287 1.27963 1.86975 1.39130 1.17046 1.82470 0.92443 0.94429 0.94414 0.89214 0.87327 0.86338 0.82605 0.81061 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.53 -30.33 8.95 25.60 0.23 -30.11 16 8 H 0.07 4.31 6.77 -2.91 -0.02 4.29 16 9 C 0.09 4.80 5.60 29.10 0.16 4.96 16 10 C 0.32 15.00 7.68 88.58 0.68 15.68 16 11 N -0.56 -25.52 10.20 -449.44 -4.59 -30.11 16 12 C 0.00 0.16 7.68 86.80 0.67 0.83 16 13 C 0.09 2.86 3.52 30.48 0.11 2.97 16 14 H 0.10 3.31 7.10 -2.38 -0.02 3.30 16 15 C -0.09 -2.57 5.06 -19.84 -0.10 -2.67 16 16 C -0.10 -2.70 9.39 22.27 0.21 -2.49 16 17 C -0.11 -1.96 10.05 22.27 0.22 -1.74 16 18 C -0.09 -1.31 10.05 22.27 0.22 -1.09 16 19 C -0.11 -1.76 9.83 22.29 0.22 -1.54 16 20 C -0.04 -0.81 6.31 22.32 0.14 -0.67 16 21 Cl -0.07 -1.52 27.39 -2.72 -0.07 -1.59 16 22 O -0.35 -14.55 9.81 -78.55 -0.77 -15.32 16 23 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 24 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.09 2.98 7.91 -2.39 -0.02 2.96 16 27 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 28 H 0.12 3.48 7.39 -2.91 -0.02 3.46 16 29 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -65.49 287.20 1.25 -64.24 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 1.14 Total: 5.59 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 3.22 Total: -14.96 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -4.30 Total: -84.88 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.77 Total: -15.32 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.59 kcal Total: -65.49 1.25 -64.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600179.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.588 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds