Wall clock time and date at job start Mon Mar 30 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99699 * 2 1 4 4 H 1.48506 * 109.47069 * 240.00024 * 3 2 1 5 5 H 1.48500 * 109.47508 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47323 * 119.99965 * 3 2 1 7 7 C 1.37873 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47529 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.84334 * 308.68809 * 10 9 7 12 12 C 1.54816 * 110.92390 * 184.99795 * 10 9 7 13 13 O 1.44241 * 101.39302 * 218.35328 * 12 10 9 14 14 C 1.34936 * 107.69213 * 24.84936 * 13 12 10 15 15 C 1.47956 * 123.09090 * 162.70773 * 14 13 12 16 16 C 1.39516 * 120.12517 * 179.74401 * 15 14 13 17 17 C 1.37939 * 119.87268 * 179.75132 * 16 15 14 18 18 C 1.38482 * 120.12323 * 0.55001 * 17 16 15 19 19 Cl 1.73599 * 119.87577 * 179.72353 * 18 17 16 20 20 C 1.38488 * 120.24918 * 359.70680 * 18 17 16 21 21 C 1.37932 * 120.12525 * 0.02562 * 20 18 17 22 22 N 1.29656 * 113.82804 * 342.71043 * 14 13 12 23 23 H 0.96994 * 120.00124 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47105 * 59.99117 * 9 7 2 25 25 H 1.09005 * 109.46659 * 300.00175 * 9 7 2 26 26 H 1.09002 * 111.04753 * 100.31366 * 12 10 9 27 27 H 1.09000 * 111.04579 * 336.39107 * 12 10 9 28 28 H 1.07996 * 120.06697 * 0.02562 * 16 15 14 29 29 H 1.08003 * 119.94016 * 180.27895 * 17 16 15 30 30 H 1.07999 * 119.93711 * 179.97438 * 20 18 17 31 31 H 1.07992 * 120.06441 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 1 2.9821 -3.5434 -0.7928 12 6 1.5099 -5.0185 -0.1241 13 8 2.2887 -5.8482 0.7622 14 6 2.8798 -5.0401 1.6668 15 6 3.4476 -5.5329 2.9411 16 6 4.0503 -4.6424 3.8300 17 6 4.5733 -5.1067 5.0189 18 6 4.5111 -6.4557 5.3257 19 17 5.1778 -7.0341 6.8206 20 6 3.9187 -7.3449 4.4447 21 6 3.3876 -6.8910 3.2555 22 7 2.9047 -3.7919 1.3167 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5570 -0.8896 25 1 0.6242 -2.5566 0.8903 26 1 1.5508 -5.3924 -1.1472 27 1 0.4788 -4.9381 0.2201 28 1 4.1033 -3.5908 3.5897 29 1 5.0361 -4.4176 5.7098 30 1 3.8734 -8.3960 4.6889 31 1 2.9262 -7.5854 2.5690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260614486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:58 Heat of formation + Delta-G solvation = 0.868302 kcal Electronic energy + Delta-G solvation = -16751.867025 eV Core-core repulsion = 13831.555452 eV Total energy + Delta-G solvation = -2920.311573 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.75273 -39.10272 -36.63319 -34.14589 -32.79681 -31.87811 -31.20715 -29.47579 -27.00634 -23.59998 -23.46675 -22.69775 -20.52217 -19.94354 -17.56047 -16.64145 -16.12896 -15.94772 -15.38427 -15.03066 -14.50942 -14.28263 -13.69008 -13.64726 -13.35693 -12.78989 -12.17048 -12.03792 -11.81888 -11.67207 -11.55271 -11.30232 -11.08651 -10.96453 -10.60625 -10.52692 -9.76959 -9.62214 -9.20965 -9.19968 -9.12974 -8.38535 -8.18562 -6.01708 -4.02279 0.65564 1.17939 1.92785 2.63238 3.34582 3.38374 3.41698 3.42550 3.72910 4.36607 4.46306 4.71670 4.74252 5.16403 5.18926 5.27382 5.34901 5.42460 5.50286 5.68252 5.77218 5.86584 6.06127 6.08236 6.27889 6.36182 6.48873 6.61015 6.84856 7.45174 7.60745 7.95014 8.13376 8.37058 9.01281 9.60683 11.10064 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.004204 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.989823 B = 6659.292206 C = 7554.135597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.058 0.942 9 C 0.041 3.959 10 C 0.029 3.971 11 H 0.094 0.906 12 C 0.020 3.980 13 O -0.353 6.353 14 C 0.295 3.705 15 C -0.018 4.018 16 C -0.057 4.057 17 C -0.115 4.115 18 C -0.024 4.024 19 Cl -0.074 7.074 20 C -0.118 4.118 21 C -0.074 4.074 22 N -0.474 5.474 23 H 0.261 0.739 24 H 0.028 0.972 25 H 0.022 0.978 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 -15.051 8.558 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.003 3.997 10 C -0.080 4.080 11 H 0.112 0.888 12 C -0.056 4.056 13 O -0.258 6.258 14 C 0.070 3.930 15 C -0.019 4.019 16 C -0.077 4.077 17 C -0.134 4.134 18 C -0.052 4.052 19 Cl -0.045 7.045 20 C -0.137 4.137 21 C -0.095 4.095 22 N -0.206 5.206 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.122 0.878 27 H 0.100 0.900 28 H 0.170 0.830 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.495 -14.310 8.812 18.401 hybrid contribution 0.011 0.425 -0.436 0.609 sum 7.506 -13.885 8.376 17.869 Atomic orbital electron populations 1.69940 1.06057 1.26802 1.51155 1.24992 0.94842 0.99276 0.95401 0.86606 0.79510 0.82918 0.78665 1.20295 1.21369 1.20168 1.21037 0.93137 0.90217 1.50019 0.92334 1.19060 0.92477 0.90398 0.97717 1.24011 0.97427 0.95644 0.90909 0.88847 1.24783 0.95837 0.91018 0.93962 1.86869 1.61326 1.36237 1.41411 1.23258 0.93342 0.86516 0.89883 1.17885 1.00010 0.93491 0.90549 1.21341 0.93756 1.01110 0.91478 1.21020 1.01121 0.93583 0.97647 1.21115 1.00743 0.94310 0.88985 1.98368 1.84239 1.89067 1.32831 1.20930 0.99310 0.99848 0.93577 1.21251 0.97473 0.94611 0.96121 1.75133 1.18747 1.14121 1.12557 0.92934 0.95412 0.95936 0.87813 0.90006 0.83027 0.84267 0.84522 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.28 9.04 -34.44 -0.31 -14.59 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.04 1.03 4.64 -27.88 -0.13 0.90 16 10 C 0.03 0.62 3.65 -66.34 -0.24 0.38 16 11 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 12 C 0.02 0.35 7.72 38.11 0.29 0.64 16 13 O -0.35 -6.07 10.68 -16.53 -0.18 -6.24 16 14 C 0.30 5.28 7.59 -14.49 -0.11 5.17 16 15 C -0.02 -0.26 5.87 -104.96 -0.62 -0.88 16 16 C -0.06 -0.78 9.63 -39.21 -0.38 -1.16 16 17 C -0.12 -1.32 9.81 -39.60 -0.39 -1.70 16 18 C -0.02 -0.26 6.33 -39.40 -0.25 -0.51 16 19 Cl -0.07 -0.72 28.95 -51.86 -1.50 -2.22 16 20 C -0.12 -1.22 9.81 -39.60 -0.39 -1.61 16 21 C -0.07 -0.89 9.67 -39.21 -0.38 -1.27 16 22 N -0.47 -9.93 10.75 -51.24 -0.55 -10.48 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.08 1.38 7.92 -51.93 -0.41 0.97 16 28 H 0.15 2.22 7.71 -52.49 -0.40 1.82 16 29 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.14 1.51 7.77 -52.49 -0.41 1.10 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -30.81 291.88 -8.41 -39.23 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -3.30 Total: -2.24 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.00 Total: -13.14 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.19 Total: -36.61 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.18 Total: -6.24 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.81 -8.41 -39.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.094 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds