Wall clock time and date at job start Mon Mar 30 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99699 * 2 1 4 4 H 1.48506 * 109.47069 * 240.00024 * 3 2 1 5 5 H 1.48500 * 109.47508 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47323 * 119.99965 * 3 2 1 7 7 C 1.37873 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47529 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.84334 * 308.68809 * 10 9 7 12 12 C 1.54816 * 110.92390 * 184.99795 * 10 9 7 13 13 O 1.44241 * 101.39302 * 218.35328 * 12 10 9 14 14 C 1.34936 * 107.69213 * 24.84936 * 13 12 10 15 15 C 1.47956 * 123.09090 * 162.70773 * 14 13 12 16 16 C 1.39516 * 120.12517 * 179.74401 * 15 14 13 17 17 C 1.37939 * 119.87268 * 179.75132 * 16 15 14 18 18 C 1.38482 * 120.12323 * 0.55001 * 17 16 15 19 19 Cl 1.73599 * 119.87577 * 179.72353 * 18 17 16 20 20 C 1.38488 * 120.24918 * 359.70680 * 18 17 16 21 21 C 1.37932 * 120.12525 * 0.02562 * 20 18 17 22 22 N 1.29656 * 113.82804 * 342.71043 * 14 13 12 23 23 H 0.96994 * 120.00124 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47105 * 59.99117 * 9 7 2 25 25 H 1.09005 * 109.46659 * 300.00175 * 9 7 2 26 26 H 1.09002 * 111.04753 * 100.31366 * 12 10 9 27 27 H 1.09000 * 111.04579 * 336.39107 * 12 10 9 28 28 H 1.07996 * 120.06697 * 0.02562 * 16 15 14 29 29 H 1.08003 * 119.94016 * 180.27895 * 17 16 15 30 30 H 1.07999 * 119.93711 * 179.97438 * 20 18 17 31 31 H 1.07992 * 120.06441 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 1 2.9821 -3.5434 -0.7928 12 6 1.5099 -5.0185 -0.1241 13 8 2.2887 -5.8482 0.7622 14 6 2.8798 -5.0401 1.6668 15 6 3.4476 -5.5329 2.9411 16 6 4.0503 -4.6424 3.8300 17 6 4.5733 -5.1067 5.0189 18 6 4.5111 -6.4557 5.3257 19 17 5.1778 -7.0341 6.8206 20 6 3.9187 -7.3449 4.4447 21 6 3.3876 -6.8910 3.2555 22 7 2.9047 -3.7919 1.3167 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5570 -0.8896 25 1 0.6242 -2.5566 0.8903 26 1 1.5508 -5.3924 -1.1472 27 1 0.4788 -4.9381 0.2201 28 1 4.1033 -3.5908 3.5897 29 1 5.0361 -4.4176 5.7098 30 1 3.8734 -8.3960 4.6889 31 1 2.9262 -7.5854 2.5690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:58 Heat of formation + Delta-G solvation = -19.859481 kcal Electronic energy + Delta-G solvation = -16752.765850 eV Core-core repulsion = 13831.555452 eV Total energy + Delta-G solvation = -2921.210397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.16342 -40.09442 -37.49060 -35.96767 -34.46211 -33.36997 -32.16676 -30.93103 -28.76511 -25.34875 -24.68409 -23.80508 -22.06267 -21.31602 -18.80003 -18.35628 -17.74418 -17.24279 -16.61789 -16.42290 -16.09200 -15.56175 -14.75733 -14.65233 -14.56934 -14.54140 -13.70921 -13.61055 -13.32657 -13.16915 -12.85866 -12.60683 -12.45168 -12.39408 -12.35432 -11.83332 -11.69725 -11.41071 -11.00472 -10.58069 -10.44883 -10.12017 -9.46518 -8.21314 -6.29436 -0.39943 0.25739 1.05583 1.35939 1.38541 1.41596 1.49545 2.13363 2.40410 2.66484 3.02091 3.15546 3.69064 3.78964 3.87693 4.00545 4.19101 4.24877 4.33148 4.49977 4.57535 4.60777 4.73203 4.95145 5.09364 5.13476 5.27671 5.36397 5.38612 5.57831 5.64469 5.74740 6.20631 6.71503 6.81643 7.37769 8.90595 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.004204 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.989823 B = 6659.292206 C = 7554.135597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.050 3.950 10 C 0.029 3.971 11 H 0.089 0.911 12 C 0.029 3.971 13 O -0.346 6.346 14 C 0.314 3.686 15 C -0.050 4.050 16 C -0.066 4.066 17 C -0.113 4.113 18 C -0.020 4.020 19 Cl -0.057 7.057 20 C -0.108 4.108 21 C -0.065 4.065 22 N -0.528 5.528 23 H 0.264 0.736 24 H 0.015 0.985 25 H -0.010 1.010 26 H 0.139 0.861 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.157 0.843 30 H 0.168 0.832 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.510 -16.604 9.540 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.071 0.929 9 C 0.012 3.988 10 C -0.080 4.080 11 H 0.107 0.893 12 C -0.047 4.047 13 O -0.250 6.250 14 C 0.089 3.911 15 C -0.051 4.051 16 C -0.086 4.086 17 C -0.132 4.132 18 C -0.047 4.047 19 Cl -0.028 7.028 20 C -0.127 4.127 21 C -0.085 4.085 22 N -0.262 5.262 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.008 0.992 26 H 0.157 0.843 27 H 0.100 0.900 28 H 0.151 0.849 29 H 0.175 0.825 30 H 0.186 0.814 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.661 -15.884 9.795 20.573 hybrid contribution -0.311 0.779 -0.607 1.035 sum 8.350 -15.106 9.187 19.553 Atomic orbital electron populations 1.70060 1.07571 1.27813 1.52031 1.25875 0.95742 1.03039 0.94914 0.85542 0.78318 0.78405 0.79024 1.19101 1.20608 1.19781 1.21380 0.93126 0.91784 1.49832 0.92882 1.18828 0.92789 0.91788 0.95347 1.23723 0.96721 0.95971 0.91608 0.89274 1.24794 0.95197 0.88939 0.95820 1.86872 1.61054 1.35879 1.41245 1.23805 0.91125 0.85871 0.90251 1.18005 1.02242 0.95079 0.89804 1.21250 0.94598 1.00296 0.92489 1.21151 1.00624 0.94459 0.96942 1.21274 0.99798 0.94150 0.89509 1.98383 1.83897 1.88789 1.31774 1.21243 0.97747 1.01261 0.92420 1.21407 0.96853 0.93351 0.96865 1.75119 1.21942 1.16027 1.13063 0.92751 0.96695 0.99201 0.84294 0.90025 0.84929 0.82536 0.81420 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.52 -30.48 9.04 25.60 0.23 -30.25 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.05 2.64 4.64 29.85 0.14 2.78 16 10 C 0.03 1.26 3.65 45.39 0.17 1.43 16 11 H 0.09 3.81 8.14 -2.39 -0.02 3.79 16 12 C 0.03 0.97 7.72 72.60 0.56 1.53 16 13 O -0.35 -11.51 10.68 -82.05 -0.88 -12.38 16 14 C 0.31 11.25 7.59 87.59 0.66 11.92 16 15 C -0.05 -1.44 5.87 -20.08 -0.12 -1.56 16 16 C -0.07 -1.81 9.63 22.51 0.22 -1.60 16 17 C -0.11 -2.42 9.81 22.26 0.22 -2.20 16 18 C -0.02 -0.38 6.33 22.39 0.14 -0.23 16 19 Cl -0.06 -0.95 28.95 -2.72 -0.08 -1.03 16 20 C -0.11 -1.89 9.81 22.26 0.22 -1.67 16 21 C -0.06 -1.40 9.67 22.51 0.22 -1.18 16 22 N -0.53 -22.87 10.75 -430.60 -4.63 -27.50 16 23 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 24 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 25 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 26 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 27 H 0.08 2.76 7.92 -2.39 -0.02 2.74 16 28 H 0.13 4.09 7.71 -2.91 -0.02 4.07 16 29 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 31 H 0.16 2.87 7.77 -2.91 -0.02 2.84 16 Total: -1.00 -67.79 291.88 0.98 -66.81 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.14 Total: 3.98 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 3.12 Total: -20.47 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -4.35 Total: -84.32 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.88 Total: -12.38 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -67.79 0.98 -66.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.949 kcal (2) G-P(sol) polarization free energy of solvation -67.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds