Wall clock time and date at job start Mon Mar 30 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99896 * 2 1 4 4 H 1.48502 * 109.47129 * 270.00008 * 3 2 1 5 5 H 1.48500 * 109.47378 * 29.99912 * 3 2 1 6 6 H 1.48494 * 109.47005 * 150.00435 * 3 2 1 7 7 C 1.37878 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00136 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99976 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46885 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.81859 * 54.30028 * 10 9 7 12 12 C 1.54819 * 110.92287 * 177.97366 * 10 9 7 13 13 O 1.44332 * 101.31703 * 141.68711 * 12 10 9 14 14 C 1.34941 * 107.69576 * 335.12801 * 13 12 10 15 15 C 1.47960 * 123.08474 * 197.29093 * 14 13 12 16 16 C 1.39520 * 120.12209 * 179.72241 * 15 14 13 17 17 C 1.37927 * 119.87234 * 179.72081 * 16 15 14 18 18 C 1.38488 * 120.12736 * 0.56257 * 17 16 15 19 19 Cl 1.73595 * 119.88077 * 179.74185 * 18 17 16 20 20 C 1.38484 * 120.24561 * 359.71546 * 18 17 16 21 21 C 1.37932 * 120.12469 * 0.02562 * 20 18 17 22 22 N 1.29655 * 113.82723 * 17.29518 * 14 13 12 23 23 H 0.97001 * 120.00284 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47008 * 59.99907 * 9 7 2 25 25 H 1.08996 * 109.46905 * 299.99832 * 9 7 2 26 26 H 1.09001 * 111.04162 * 259.72126 * 12 10 9 27 27 H 1.09003 * 111.04483 * 23.67633 * 12 10 9 28 28 H 1.08001 * 120.06252 * 0.02562 * 16 15 14 29 29 H 1.08004 * 119.93853 * 180.27834 * 17 16 15 30 30 H 1.08000 * 119.93989 * 180.02562 * 20 18 17 31 31 H 1.07999 * 120.06235 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 1 3.5898 -3.2001 -0.8281 12 6 5.5684 -2.6761 -0.0527 13 8 5.8530 -3.7828 0.8289 14 6 4.8143 -3.9057 1.6815 15 6 4.8941 -4.6676 2.9474 16 6 3.7825 -4.7496 3.7865 17 6 3.8609 -5.4660 4.9625 18 6 5.0437 -6.0934 5.3167 19 17 5.1372 -6.9877 6.8016 20 6 6.1519 -6.0104 4.4904 21 6 6.0833 -5.3012 3.3094 22 7 3.7398 -3.2951 1.2895 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6804 0.8889 25 1 3.8745 -0.6800 -0.8911 26 1 5.9210 -2.8796 -1.0638 27 1 5.9966 -1.7499 0.3305 28 1 2.8609 -4.2573 3.5133 29 1 2.9997 -5.5339 5.6107 30 1 7.0716 -6.5020 4.7713 31 1 6.9483 -5.2369 2.6660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260614489.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:00 Heat of formation + Delta-G solvation = 5.563800 kcal Electronic energy + Delta-G solvation = -16796.564553 eV Core-core repulsion = 13876.456592 eV Total energy + Delta-G solvation = -2920.107961 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.83970 -39.12883 -36.64420 -34.24568 -32.80304 -31.94449 -31.22983 -29.74286 -27.42656 -23.61188 -23.40093 -22.58995 -20.52985 -19.91819 -17.63555 -16.78575 -16.43523 -16.01755 -15.43755 -15.09257 -14.45874 -14.22245 -13.71388 -13.66126 -13.46559 -12.75644 -12.38115 -12.22412 -12.08483 -11.77831 -11.69809 -11.38509 -11.33468 -10.97902 -10.55882 -10.23403 -9.84636 -9.61338 -9.31717 -9.21254 -9.20075 -8.55219 -8.25394 -6.03452 -4.00637 0.63036 1.16680 1.91828 2.57995 3.27254 3.35466 3.35943 3.37238 3.69343 4.29772 4.43037 4.69725 4.72847 5.03600 5.15228 5.24302 5.27605 5.30766 5.48117 5.58331 5.69191 5.84559 5.96006 6.06376 6.15548 6.32455 6.35608 6.58947 6.70054 6.94371 7.20265 7.71303 8.06656 8.54302 9.04534 9.57170 11.10122 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027871 B = 0.004207 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.404639 B = 6653.900669 C = 7292.426491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.077 0.923 9 C 0.004 3.996 10 C 0.038 3.962 11 H 0.099 0.901 12 C 0.019 3.981 13 O -0.352 6.352 14 C 0.297 3.703 15 C -0.020 4.020 16 C -0.056 4.056 17 C -0.115 4.115 18 C -0.023 4.023 19 Cl -0.073 7.073 20 C -0.119 4.119 21 C -0.074 4.074 22 N -0.470 5.470 23 H 0.263 0.737 24 H 0.021 0.979 25 H 0.023 0.977 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.153 0.847 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.661 -11.616 8.723 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.543 4.543 8 H 0.095 0.905 9 C -0.034 4.034 10 C -0.071 4.071 11 H 0.117 0.883 12 C -0.058 4.058 13 O -0.257 6.257 14 C 0.072 3.928 15 C -0.021 4.021 16 C -0.075 4.075 17 C -0.133 4.133 18 C -0.051 4.051 19 Cl -0.044 7.044 20 C -0.137 4.137 21 C -0.094 4.094 22 N -0.201 5.201 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.124 0.876 27 H 0.098 0.902 28 H 0.171 0.829 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.803 -11.446 8.950 19.365 hybrid contribution 1.001 1.025 -0.422 1.494 sum 13.804 -10.421 8.527 19.284 Atomic orbital electron populations 1.69901 1.06183 1.26743 1.51251 1.24986 0.94730 0.98855 0.94858 0.86857 0.80352 0.84096 0.78405 1.20285 1.21248 1.19297 1.20942 0.88528 0.94714 1.50141 0.90468 1.19539 0.98594 0.88518 0.96712 1.23743 0.90733 1.00373 0.92276 0.88294 1.24812 0.98400 0.88370 0.94199 1.86897 1.43809 1.50292 1.44707 1.23303 0.84340 0.94747 0.90445 1.17871 0.94981 0.98533 0.90762 1.21369 0.98804 0.95599 0.91767 1.21034 0.96959 0.97835 0.97510 1.21126 0.96068 0.98514 0.89355 1.98370 1.98525 1.73969 1.33573 1.20926 0.97926 1.00740 0.94132 1.21241 0.97404 0.94991 0.95795 1.75179 1.22732 1.11087 1.11128 0.92754 0.96099 0.95924 0.87597 0.90169 0.82887 0.84190 0.84518 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.51 -14.38 9.54 -34.44 -0.33 -14.71 16 8 H 0.08 2.41 7.99 -52.49 -0.42 1.99 16 9 C 0.00 0.09 3.72 -27.88 -0.10 -0.01 16 10 C 0.04 0.77 3.67 -66.38 -0.24 0.53 16 11 H 0.10 2.00 8.14 -51.93 -0.42 1.57 16 12 C 0.02 0.30 7.73 38.12 0.29 0.59 16 13 O -0.35 -5.79 10.68 -16.54 -0.18 -5.97 16 14 C 0.30 5.18 7.59 -14.49 -0.11 5.07 16 15 C -0.02 -0.29 5.87 -104.96 -0.62 -0.91 16 16 C -0.06 -0.76 9.63 -39.22 -0.38 -1.14 16 17 C -0.11 -1.31 9.81 -39.60 -0.39 -1.70 16 18 C -0.02 -0.25 6.33 -39.40 -0.25 -0.50 16 19 Cl -0.07 -0.71 28.95 -51.86 -1.50 -2.21 16 20 C -0.12 -1.21 9.81 -39.60 -0.39 -1.60 16 21 C -0.07 -0.86 9.67 -39.21 -0.38 -1.24 16 22 N -0.47 -9.70 10.69 -51.29 -0.55 -10.25 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 28 H 0.15 2.27 7.71 -52.49 -0.40 1.87 16 29 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.14 1.45 7.77 -52.49 -0.41 1.04 16 LS Contribution 288.20 15.07 4.34 4.34 Total: -1.00 -31.58 288.20 -8.03 -39.62 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -3.27 Total: -1.51 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -2.99 Total: -13.78 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.23 Total: -37.34 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.18 Total: -5.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.58 -8.03 -39.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614489.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.182 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds