Wall clock time and date at job start Mon Mar 30 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99896 * 2 1 4 4 H 1.48502 * 109.47129 * 270.00008 * 3 2 1 5 5 H 1.48500 * 109.47378 * 29.99912 * 3 2 1 6 6 H 1.48494 * 109.47005 * 150.00435 * 3 2 1 7 7 C 1.37878 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00136 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99976 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46885 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.81859 * 54.30028 * 10 9 7 12 12 C 1.54819 * 110.92287 * 177.97366 * 10 9 7 13 13 O 1.44332 * 101.31703 * 141.68711 * 12 10 9 14 14 C 1.34941 * 107.69576 * 335.12801 * 13 12 10 15 15 C 1.47960 * 123.08474 * 197.29093 * 14 13 12 16 16 C 1.39520 * 120.12209 * 179.72241 * 15 14 13 17 17 C 1.37927 * 119.87234 * 179.72081 * 16 15 14 18 18 C 1.38488 * 120.12736 * 0.56257 * 17 16 15 19 19 Cl 1.73595 * 119.88077 * 179.74185 * 18 17 16 20 20 C 1.38484 * 120.24561 * 359.71546 * 18 17 16 21 21 C 1.37932 * 120.12469 * 0.02562 * 20 18 17 22 22 N 1.29655 * 113.82723 * 17.29518 * 14 13 12 23 23 H 0.97001 * 120.00284 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47008 * 59.99907 * 9 7 2 25 25 H 1.08996 * 109.46905 * 299.99832 * 9 7 2 26 26 H 1.09001 * 111.04162 * 259.72126 * 12 10 9 27 27 H 1.09003 * 111.04483 * 23.67633 * 12 10 9 28 28 H 1.08001 * 120.06252 * 0.02562 * 16 15 14 29 29 H 1.08004 * 119.93853 * 180.27834 * 17 16 15 30 30 H 1.08000 * 119.93989 * 180.02562 * 20 18 17 31 31 H 1.07999 * 120.06235 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 1 3.5898 -3.2001 -0.8281 12 6 5.5684 -2.6761 -0.0527 13 8 5.8530 -3.7828 0.8289 14 6 4.8143 -3.9057 1.6815 15 6 4.8941 -4.6676 2.9474 16 6 3.7825 -4.7496 3.7865 17 6 3.8609 -5.4660 4.9625 18 6 5.0437 -6.0934 5.3167 19 17 5.1372 -6.9877 6.8016 20 6 6.1519 -6.0104 4.4904 21 6 6.0833 -5.3012 3.3094 22 7 3.7398 -3.2951 1.2895 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6804 0.8889 25 1 3.8745 -0.6800 -0.8911 26 1 5.9210 -2.8796 -1.0638 27 1 5.9966 -1.7499 0.3305 28 1 2.8609 -4.2573 3.5133 29 1 2.9997 -5.5339 5.6107 30 1 7.0716 -6.5020 4.7713 31 1 6.9483 -5.2369 2.6660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614489.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:59 Heat of formation + Delta-G solvation = -16.868021 kcal Electronic energy + Delta-G solvation = -16797.537269 eV Core-core repulsion = 13876.456592 eV Total energy + Delta-G solvation = -2921.080678 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.17699 -40.10253 -37.49672 -35.96680 -34.46138 -33.48223 -32.18247 -31.18305 -29.04250 -25.07018 -24.69799 -23.75026 -21.99881 -21.29877 -19.04585 -18.49467 -17.81311 -17.23467 -16.58134 -16.35578 -16.04869 -15.61510 -14.79973 -14.77814 -14.57204 -14.54856 -13.99156 -13.73253 -13.43637 -13.27231 -12.88278 -12.58916 -12.36834 -12.32994 -11.98772 -11.83496 -11.71585 -11.53035 -11.03114 -10.76247 -10.45848 -10.12759 -9.47927 -8.27141 -6.30296 -0.40803 0.25050 1.05086 1.33534 1.34880 1.37389 1.47460 2.12538 2.35509 2.65424 2.99431 3.11966 3.64557 3.78468 3.86979 3.99114 4.17645 4.22887 4.31397 4.48307 4.53654 4.59465 4.67209 4.94261 5.03993 5.08267 5.13137 5.25898 5.36699 5.44918 5.61247 5.63920 6.29664 6.70227 6.78012 7.31276 8.90389 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027871 B = 0.004207 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.404639 B = 6653.900669 C = 7292.426491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.259 1.259 5 H -0.286 1.286 6 H -0.250 1.250 7 C -0.512 4.512 8 H 0.027 0.973 9 C 0.010 3.990 10 C 0.031 3.969 11 H 0.084 0.916 12 C 0.029 3.971 13 O -0.346 6.346 14 C 0.316 3.684 15 C -0.050 4.050 16 C -0.068 4.068 17 C -0.114 4.114 18 C -0.019 4.019 19 Cl -0.058 7.058 20 C -0.108 4.108 21 C -0.063 4.063 22 N -0.533 5.533 23 H 0.265 0.735 24 H 0.016 0.984 25 H 0.042 0.958 26 H 0.142 0.858 27 H 0.093 0.907 28 H 0.129 0.871 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.078 -11.770 9.573 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.184 1.184 5 H -0.212 1.212 6 H -0.174 1.174 7 C -0.551 4.551 8 H 0.045 0.955 9 C -0.028 4.028 10 C -0.078 4.078 11 H 0.102 0.898 12 C -0.047 4.047 13 O -0.250 6.250 14 C 0.092 3.908 15 C -0.052 4.052 16 C -0.088 4.088 17 C -0.133 4.133 18 C -0.047 4.047 19 Cl -0.028 7.028 20 C -0.126 4.126 21 C -0.082 4.082 22 N -0.266 5.266 23 H 0.074 0.926 24 H 0.034 0.966 25 H 0.061 0.939 26 H 0.160 0.840 27 H 0.111 0.889 28 H 0.147 0.853 29 H 0.172 0.828 30 H 0.187 0.813 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 16.249 -11.625 9.798 22.252 hybrid contribution -0.081 0.878 -0.567 1.048 sum 16.167 -10.746 9.231 21.496 Atomic orbital electron populations 1.70079 1.08365 1.28008 1.53043 1.26016 0.95648 1.03439 0.94399 0.85643 0.79258 0.78171 0.79427 1.18403 1.21206 1.17363 1.21202 0.91415 0.92899 1.49537 0.95494 1.19421 0.94996 0.91349 0.96996 1.23574 0.93920 0.98044 0.92274 0.89761 1.24879 0.94850 0.88916 0.96088 1.86896 1.43206 1.50403 1.44533 1.23771 0.83552 0.92835 0.90608 1.17999 0.96612 1.00383 0.90193 1.21235 0.98049 0.96533 0.92944 1.21136 0.98065 0.97311 0.96783 1.21273 0.95871 0.97708 0.89830 1.98383 1.98461 1.73429 1.32572 1.21257 0.98790 0.99610 0.92983 1.21416 0.96596 0.93886 0.96351 1.75200 1.24709 1.14409 1.12305 0.92603 0.96608 0.93943 0.84009 0.88929 0.85321 0.82764 0.81314 0.82338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 2 C 0.00 0.06 5.47 84.65 0.46 0.52 16 3 Si 0.95 44.48 27.47 68.60 1.88 46.37 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.51 -30.42 9.54 25.60 0.24 -30.18 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 9 C 0.01 0.46 3.72 29.85 0.11 0.58 16 10 C 0.03 1.28 3.67 45.40 0.17 1.45 16 11 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 12 C 0.03 0.86 7.73 72.60 0.56 1.42 16 13 O -0.35 -10.72 10.68 -82.10 -0.88 -11.60 16 14 C 0.32 11.00 7.59 87.59 0.66 11.66 16 15 C -0.05 -1.43 5.87 -20.08 -0.12 -1.55 16 16 C -0.07 -1.89 9.63 22.51 0.22 -1.67 16 17 C -0.11 -2.51 9.81 22.26 0.22 -2.29 16 18 C -0.02 -0.37 6.33 22.39 0.14 -0.23 16 19 Cl -0.06 -0.96 28.95 -2.72 -0.08 -1.04 16 20 C -0.11 -1.84 9.81 22.26 0.22 -1.62 16 21 C -0.06 -1.30 9.67 22.51 0.22 -1.08 16 22 N -0.53 -22.83 10.69 -430.73 -4.60 -27.44 16 23 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 24 H 0.02 0.75 7.20 -2.38 -0.02 0.74 16 25 H 0.04 1.82 7.57 -2.39 -0.02 1.80 16 26 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.09 2.56 7.92 -2.39 -0.02 2.54 16 28 H 0.13 4.18 7.71 -2.91 -0.02 4.16 16 29 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 30 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.16 2.71 7.77 -2.91 -0.02 2.69 16 Total: -1.00 -71.84 288.20 0.81 -71.02 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.09 Total: 6.68 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 3.11 Total: -22.99 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -4.31 Total: -88.45 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.88 Total: -11.60 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -71.84 0.81 -71.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614489.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.155 kcal (2) G-P(sol) polarization free energy of solvation -71.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds