Wall clock time and date at job start Mon Mar 30 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30601 * 1 3 3 Si 1.86798 * 119.99699 * 2 1 4 4 H 1.48498 * 109.47362 * 270.00363 * 3 2 1 5 5 H 1.48503 * 109.47321 * 30.00607 * 3 2 1 6 6 H 1.48497 * 109.46768 * 150.00375 * 3 2 1 7 7 C 1.40215 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.41255 * 119.99758 * 359.97438 * 7 2 1 10 10 N 1.30644 * 123.22574 * 180.02562 * 9 7 2 11 11 C 1.47581 * 108.34153 * 180.64690 * 10 9 7 12 12 H 1.08995 * 110.90299 * 256.75107 * 11 10 9 13 13 C 1.52998 * 110.90443 * 133.19068 * 11 10 9 14 14 C 1.50696 * 109.47191 * 66.45321 * 13 11 10 15 15 C 1.38270 * 119.99469 * 270.02217 * 14 13 11 16 16 C 1.38214 * 120.02760 * 179.97438 * 15 14 13 17 17 C 1.38239 * 120.01500 * 359.97438 * 16 15 14 18 18 C 1.38337 * 119.98338 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 120.01149 * 180.29692 * 18 17 16 20 20 C 1.38188 * 119.99322 * 89.99799 * 14 13 11 21 21 C 1.54789 * 102.10478 * 14.98898 * 11 10 9 22 22 O 1.35197 * 123.22847 * 0.02562 * 9 7 2 23 23 H 0.96995 * 120.00347 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46988 * 306.45186 * 13 11 10 25 25 H 1.09001 * 109.46859 * 186.45394 * 13 11 10 26 26 H 1.08005 * 119.98301 * 359.97438 * 15 14 13 27 27 H 1.07997 * 119.99806 * 180.02562 * 16 15 14 28 28 H 1.08001 * 120.00716 * 180.02562 * 17 16 15 29 29 H 1.07996 * 120.01013 * 359.97438 * 20 14 13 30 30 H 1.09000 * 111.02014 * 94.39090 * 21 11 10 31 31 H 1.09001 * 111.01441 * 218.27303 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.4873 2.0466 -1.4000 5 1 1.4374 2.6527 0.7002 6 1 3.5375 1.4402 0.7000 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2142 -0.0010 9 6 1.3008 -2.4376 -0.0005 10 7 1.8893 -3.6040 -0.0005 11 6 0.8479 -4.6496 -0.0164 12 1 0.7289 -5.0948 0.9714 13 6 1.1663 -5.7214 -1.0607 14 6 2.4085 -6.4693 -0.6503 15 6 3.6510 -6.0255 -1.0640 16 6 4.7908 -6.7107 -0.6875 17 6 4.6893 -7.8400 0.1033 18 6 3.4465 -8.2839 0.5183 19 17 3.3187 -9.6975 1.5178 20 6 2.3057 -7.5984 0.1398 21 6 -0.4130 -3.8458 -0.4164 22 8 -0.0490 -2.5137 -0.0005 23 1 -0.4850 0.8400 0.0004 24 1 1.3304 -5.2480 -2.0288 25 1 0.3305 -6.4173 -1.1335 26 1 3.7308 -5.1430 -1.6815 27 1 5.7610 -6.3634 -1.0105 28 1 5.5800 -8.3751 0.3977 29 1 1.3353 -7.9446 0.4635 30 1 -0.5783 -3.8881 -1.4930 31 1 -1.2899 -4.1987 0.1262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260616876.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:51 Heat of formation + Delta-G solvation = -12.425340 kcal Electronic energy + Delta-G solvation = -17036.793651 eV Core-core repulsion = 14115.905623 eV Total energy + Delta-G solvation = -2920.888029 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.50868 -38.77629 -36.34244 -33.90107 -33.20629 -30.96424 -30.39017 -29.45812 -26.39371 -25.15395 -22.37569 -21.57271 -20.59193 -19.35405 -17.27240 -16.65174 -15.59766 -15.20378 -15.10666 -14.86004 -14.22656 -13.67157 -13.52729 -13.23040 -13.05718 -12.66625 -12.12382 -11.60539 -11.46036 -11.40346 -11.22506 -11.03682 -10.90415 -10.73801 -10.71302 -10.56026 -10.14135 -10.08178 -9.21024 -8.60319 -8.29986 -8.17224 -7.56288 -6.77463 -4.76780 1.49957 1.56668 2.28676 2.96057 3.07385 3.12910 3.85631 3.91442 3.98972 4.92987 5.05873 5.07962 5.25908 5.33694 5.56126 5.65441 5.70841 5.85558 5.95008 6.00858 6.10157 6.15908 6.27777 6.30513 6.44845 6.66790 6.85664 6.88096 7.09438 7.12859 7.14872 7.76931 8.25881 8.60518 8.84362 9.92090 10.23886 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.032074 B = 0.004343 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.780911 B = 6445.711416 C = 6912.008044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.079 3.921 3 Si 0.922 3.078 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.449 4.449 8 H 0.101 0.899 9 C 0.411 3.589 10 N -0.686 5.686 11 C 0.049 3.951 12 H 0.053 0.947 13 C -0.063 4.063 14 C -0.037 4.037 15 C -0.079 4.079 16 C -0.111 4.111 17 C -0.126 4.126 18 C -0.037 4.037 19 Cl -0.089 7.089 20 C -0.117 4.117 21 C 0.015 3.985 22 O -0.314 6.314 23 H 0.281 0.719 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.055 0.945 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -10.398 -1.822 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.144 4.144 3 Si 0.746 3.254 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.487 4.487 8 H 0.119 0.881 9 C 0.214 3.786 10 N -0.438 5.438 11 C -0.063 4.063 12 H 0.071 0.929 13 C -0.101 4.101 14 C -0.037 4.037 15 C -0.097 4.097 16 C -0.129 4.129 17 C -0.144 4.144 18 C -0.064 4.064 19 Cl -0.060 7.060 20 C -0.136 4.136 21 C -0.064 4.064 22 O -0.218 6.218 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.074 0.926 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.791 -10.684 -1.660 11.457 hybrid contribution -0.617 0.589 0.181 0.872 sum 3.174 -10.095 -1.478 10.685 Atomic orbital electron populations 1.69748 1.07488 1.29277 1.33745 1.26075 0.94906 1.01738 0.91695 0.86086 0.80307 0.79732 0.79279 1.19271 1.20174 1.18287 1.18833 0.94534 0.86333 1.48996 0.88079 1.21945 0.78405 0.94109 0.84123 1.75635 1.24178 0.96141 1.47868 1.22984 0.91326 0.95934 0.96026 0.92873 1.20609 0.93575 0.96364 0.99521 1.19738 0.95913 0.92858 0.95237 1.21191 0.91415 0.98228 0.98829 1.21079 0.98960 0.94830 0.98078 1.20899 0.95665 0.97990 0.99874 1.20784 0.95313 0.91268 0.98991 1.98334 1.98530 1.40313 1.68809 1.20880 0.97287 0.95924 0.99459 1.24275 0.98602 0.84578 0.98912 1.87364 1.23745 1.28878 1.81851 0.90837 0.90996 0.91912 0.85062 0.85551 0.85742 0.85655 0.92635 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.38 11.82 55.56 0.66 -19.73 16 2 C 0.08 1.98 5.50 -17.33 -0.10 1.89 16 3 Si 0.92 18.54 29.56 -169.99 -5.02 13.51 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.45 -12.16 9.47 -37.69 -0.36 -12.51 16 8 H 0.10 2.66 7.85 -52.49 -0.41 2.25 16 9 C 0.41 11.29 7.38 -16.91 -0.12 11.16 16 10 N -0.69 -17.46 11.07 -53.14 -0.59 -18.05 16 11 C 0.05 1.05 3.74 -66.40 -0.25 0.80 16 12 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.06 -1.09 5.03 -27.89 -0.14 -1.23 16 14 C -0.04 -0.63 4.99 -104.63 -0.52 -1.15 16 15 C -0.08 -1.31 9.45 -39.58 -0.37 -1.68 16 16 C -0.11 -1.60 10.05 -39.59 -0.40 -2.00 16 17 C -0.13 -1.75 9.83 -39.54 -0.39 -2.14 16 18 C -0.04 -0.55 6.32 -39.49 -0.25 -0.80 16 19 Cl -0.09 -1.16 28.96 -51.86 -1.50 -2.66 16 20 C -0.12 -1.82 9.49 -39.55 -0.38 -2.20 16 21 C 0.01 0.32 7.71 38.10 0.29 0.61 16 22 O -0.31 -8.45 9.20 -17.29 -0.16 -8.60 16 23 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 24 H 0.07 1.27 8.09 -51.92 -0.42 0.85 16 25 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 26 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 289.60 15.07 4.36 4.36 Total: -1.00 -28.80 289.60 -8.57 -37.36 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.33 Total: 3.05 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.98 Total: -9.24 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.07 Total: -37.78 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.16 Total: -8.60 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.51 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.80 -8.57 -37.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616876.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.937 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds