Wall clock time and date at job start Mon Mar 30 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30601 * 1 3 3 Si 1.86798 * 119.99699 * 2 1 4 4 H 1.48498 * 109.47362 * 270.00363 * 3 2 1 5 5 H 1.48503 * 109.47321 * 30.00607 * 3 2 1 6 6 H 1.48497 * 109.46768 * 150.00375 * 3 2 1 7 7 C 1.40215 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.41255 * 119.99758 * 359.97438 * 7 2 1 10 10 N 1.30644 * 123.22574 * 180.02562 * 9 7 2 11 11 C 1.47581 * 108.34153 * 180.64690 * 10 9 7 12 12 H 1.08995 * 110.90299 * 256.75107 * 11 10 9 13 13 C 1.52998 * 110.90443 * 133.19068 * 11 10 9 14 14 C 1.50696 * 109.47191 * 66.45321 * 13 11 10 15 15 C 1.38270 * 119.99469 * 270.02217 * 14 13 11 16 16 C 1.38214 * 120.02760 * 179.97438 * 15 14 13 17 17 C 1.38239 * 120.01500 * 359.97438 * 16 15 14 18 18 C 1.38337 * 119.98338 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 120.01149 * 180.29692 * 18 17 16 20 20 C 1.38188 * 119.99322 * 89.99799 * 14 13 11 21 21 C 1.54789 * 102.10478 * 14.98898 * 11 10 9 22 22 O 1.35197 * 123.22847 * 0.02562 * 9 7 2 23 23 H 0.96995 * 120.00347 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46988 * 306.45186 * 13 11 10 25 25 H 1.09001 * 109.46859 * 186.45394 * 13 11 10 26 26 H 1.08005 * 119.98301 * 359.97438 * 15 14 13 27 27 H 1.07997 * 119.99806 * 180.02562 * 16 15 14 28 28 H 1.08001 * 120.00716 * 180.02562 * 17 16 15 29 29 H 1.07996 * 120.01013 * 359.97438 * 20 14 13 30 30 H 1.09000 * 111.02014 * 94.39090 * 21 11 10 31 31 H 1.09001 * 111.01441 * 218.27303 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.4873 2.0466 -1.4000 5 1 1.4374 2.6527 0.7002 6 1 3.5375 1.4402 0.7000 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2142 -0.0010 9 6 1.3008 -2.4376 -0.0005 10 7 1.8893 -3.6040 -0.0005 11 6 0.8479 -4.6496 -0.0164 12 1 0.7289 -5.0948 0.9714 13 6 1.1663 -5.7214 -1.0607 14 6 2.4085 -6.4693 -0.6503 15 6 3.6510 -6.0255 -1.0640 16 6 4.7908 -6.7107 -0.6875 17 6 4.6893 -7.8400 0.1033 18 6 3.4465 -8.2839 0.5183 19 17 3.3187 -9.6975 1.5178 20 6 2.3057 -7.5984 0.1398 21 6 -0.4130 -3.8458 -0.4164 22 8 -0.0490 -2.5137 -0.0005 23 1 -0.4850 0.8400 0.0004 24 1 1.3304 -5.2480 -2.0288 25 1 0.3305 -6.4173 -1.1335 26 1 3.7308 -5.1430 -1.6815 27 1 5.7610 -6.3634 -1.0105 28 1 5.5800 -8.3751 0.3977 29 1 1.3353 -7.9446 0.4635 30 1 -0.5783 -3.8881 -1.4930 31 1 -1.2899 -4.1987 0.1262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260616876.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:50 Heat of formation + Delta-G solvation = -31.080098 kcal Electronic energy + Delta-G solvation = -17037.602582 eV Core-core repulsion = 14115.905623 eV Total energy + Delta-G solvation = -2921.696960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23919 -40.12324 -37.45256 -35.63475 -34.90678 -32.69922 -31.60492 -31.08369 -28.14631 -26.77426 -23.56278 -23.03748 -22.26284 -21.09436 -19.22206 -17.85738 -17.16914 -17.00793 -16.34756 -16.28085 -15.94414 -15.46578 -14.72878 -14.50773 -14.38784 -14.26983 -13.61484 -13.12565 -13.08934 -12.94011 -12.65278 -12.56811 -12.38814 -12.25592 -12.10871 -12.00123 -11.78546 -11.55057 -11.05531 -10.10945 -9.79288 -9.58106 -9.41758 -8.66014 -6.78182 0.29912 0.38332 1.16296 1.33816 1.43217 1.59033 2.02634 2.23687 2.74305 3.15185 3.38182 3.71048 3.93066 4.10406 4.12684 4.29326 4.36598 4.45311 4.47017 4.48008 4.61027 4.76386 4.85053 5.03968 5.19148 5.21104 5.23734 5.32212 5.47886 5.75996 5.84113 5.95153 6.25555 6.65663 6.84509 7.96442 8.36839 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.032074 B = 0.004343 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.780911 B = 6445.711416 C = 6912.008044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.038 3.962 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.386 3.614 10 N -0.700 5.700 11 C 0.049 3.951 12 H 0.047 0.953 13 C -0.053 4.053 14 C -0.057 4.057 15 C -0.099 4.099 16 C -0.110 4.110 17 C -0.122 4.122 18 C -0.044 4.044 19 Cl -0.073 7.073 20 C -0.122 4.122 21 C 0.010 3.990 22 O -0.343 6.343 23 H 0.290 0.710 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.115 0.885 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.137 0.863 30 H 0.066 0.934 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 -10.890 -1.696 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.182 4.182 3 Si 0.820 3.180 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.523 4.523 8 H 0.115 0.885 9 C 0.188 3.812 10 N -0.452 5.452 11 C -0.062 4.062 12 H 0.065 0.935 13 C -0.091 4.091 14 C -0.058 4.058 15 C -0.118 4.118 16 C -0.128 4.128 17 C -0.140 4.140 18 C -0.071 4.071 19 Cl -0.044 7.044 20 C -0.141 4.141 21 C -0.068 4.068 22 O -0.249 6.249 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.133 0.867 27 H 0.169 0.831 28 H 0.169 0.831 29 H 0.155 0.845 30 H 0.085 0.915 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.501 -11.216 -1.538 12.182 hybrid contribution -0.851 0.580 0.174 1.044 sum 3.650 -10.635 -1.364 11.327 Atomic orbital electron populations 1.69808 1.09107 1.30905 1.33859 1.27024 0.95727 1.05062 0.90379 0.84924 0.78718 0.74564 0.79773 1.18185 1.18887 1.18043 1.19153 0.94684 0.87664 1.50774 0.88534 1.22292 0.78921 0.94921 0.85104 1.75561 1.25977 0.96725 1.46911 1.23043 0.90295 0.95857 0.97037 0.93469 1.20494 0.95271 0.95728 0.97565 1.19749 0.95659 0.93791 0.96562 1.21228 0.92490 0.98397 0.99646 1.21350 0.99296 0.94612 0.97535 1.21231 0.96413 0.97570 0.98796 1.20950 0.95434 0.91717 0.98986 1.98339 1.98521 1.39287 1.68265 1.21006 0.98323 0.95583 0.99150 1.24535 0.99569 0.82676 1.00009 1.87296 1.23684 1.31620 1.82257 0.89892 0.91916 0.88869 0.86730 0.83106 0.83097 0.84492 0.91537 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.02 11.82 21.87 0.26 -42.76 16 2 C 0.04 1.91 5.50 85.36 0.47 2.38 16 3 Si 1.00 37.80 29.56 68.60 2.03 39.83 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 5 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.49 -26.98 9.47 23.49 0.22 -26.76 16 8 H 0.10 5.24 7.85 -2.91 -0.02 5.22 16 9 C 0.39 21.79 7.38 85.61 0.63 22.42 16 10 N -0.70 -36.50 11.07 -435.96 -4.82 -41.32 16 11 C 0.05 2.11 3.74 45.39 0.17 2.28 16 12 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 13 C -0.05 -1.81 5.03 29.85 0.15 -1.66 16 14 C -0.06 -1.91 4.99 -19.87 -0.10 -2.01 16 15 C -0.10 -3.30 9.45 22.27 0.21 -3.09 16 16 C -0.11 -3.01 10.05 22.26 0.22 -2.78 16 17 C -0.12 -3.11 9.83 22.29 0.22 -2.89 16 18 C -0.04 -1.22 6.32 22.33 0.14 -1.08 16 19 Cl -0.07 -1.75 28.96 -2.72 -0.08 -1.83 16 20 C -0.12 -3.64 9.49 22.29 0.21 -3.42 16 21 C 0.01 0.41 7.71 72.59 0.56 0.97 16 22 O -0.34 -18.90 9.20 -84.77 -0.78 -19.68 16 23 H 0.29 13.77 8.29 -92.71 -0.77 13.00 16 24 H 0.06 2.24 8.09 -2.38 -0.02 2.22 16 25 H 0.09 2.58 8.09 -2.39 -0.02 2.56 16 26 H 0.11 4.11 8.06 -2.91 -0.02 4.08 16 27 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.07 2.66 7.92 -2.39 -0.02 2.64 16 31 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 Total: -1.00 -62.87 289.60 0.85 -62.02 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 1.14 Total: 19.38 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 3.11 Total: -15.64 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -4.57 Total: -84.08 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.78 Total: -19.68 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.08 Total: -1.83 kcal Total: -62.87 0.85 -62.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616876.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.944 kcal (2) G-P(sol) polarization free energy of solvation -62.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds