Wall clock time and date at job start Mon Mar 30 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30602 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48502 * 109.47009 * 239.99922 * 3 2 1 5 5 H 1.48497 * 109.47550 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46974 * 120.00582 * 3 2 1 7 7 C 1.40218 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.41252 * 120.00167 * 359.97438 * 7 2 1 10 10 N 1.30633 * 123.22390 * 180.02562 * 9 7 2 11 11 C 1.47584 * 108.33782 * 179.37270 * 10 9 7 12 12 H 1.09003 * 110.90775 * 103.21070 * 11 10 9 13 13 C 1.52996 * 110.90619 * 226.81121 * 11 10 9 14 14 C 1.50700 * 109.47071 * 287.71784 * 13 11 10 15 15 C 1.38264 * 119.99377 * 90.00116 * 14 13 11 16 16 C 1.38217 * 120.02859 * 179.97438 * 15 14 13 17 17 C 1.38233 * 120.01354 * 0.02562 * 16 15 14 18 18 C 1.38330 * 119.98828 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 120.01540 * 180.02562 * 18 17 16 20 20 C 1.38200 * 119.99707 * 269.72602 * 14 13 11 21 21 C 1.54787 * 102.10866 * 345.01203 * 11 10 9 22 22 O 1.35197 * 123.22497 * 0.03171 * 9 7 2 23 23 H 0.97007 * 120.00160 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47515 * 47.71643 * 13 11 10 25 25 H 1.09002 * 109.47236 * 167.72264 * 13 11 10 26 26 H 1.08008 * 119.98317 * 359.97438 * 15 14 13 27 27 H 1.08000 * 119.99251 * 180.02562 * 16 15 14 28 28 H 1.07998 * 120.00881 * 180.02562 * 17 16 15 29 29 H 1.08003 * 119.99892 * 0.02562 * 20 14 13 30 30 H 1.09002 * 111.02182 * 265.61401 * 21 11 10 31 31 H 1.08998 * 111.02090 * 141.72314 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.0937 1.6965 -1.2125 5 1 1.2750 2.7465 0.0006 6 1 3.0938 1.6964 1.2125 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2143 -0.0001 9 6 1.3009 -2.4376 -0.0005 10 7 1.8894 -3.6039 -0.0005 11 6 0.8480 -4.6495 0.0148 12 1 0.7287 -5.0942 -0.9732 13 6 1.1660 -5.7215 1.0591 14 6 2.3214 -6.5621 0.5803 15 6 3.6177 -6.1992 0.8957 16 6 4.6780 -6.9700 0.4573 17 6 4.4429 -8.1041 -0.2972 18 6 3.1463 -8.4672 -0.6141 19 17 2.8502 -9.8917 -1.5611 20 6 2.0849 -7.6989 -0.1693 21 6 -0.4131 -3.8459 0.4146 22 8 -0.0490 -2.5137 -0.0007 23 1 -0.4851 0.8401 0.0004 24 1 1.4310 -5.2430 2.0019 25 1 0.2918 -6.3557 1.2066 26 1 3.8019 -5.3129 1.4849 27 1 5.6903 -6.6861 0.7044 28 1 5.2713 -8.7065 -0.6393 29 1 1.0720 -7.9845 -0.4122 30 1 -0.5788 -3.8883 1.4911 31 1 -1.2899 -4.1986 -0.1284 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260616880.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:52 Heat of formation + Delta-G solvation = -31.350121 kcal Electronic energy + Delta-G solvation = -17002.945841 eV Core-core repulsion = 14081.237172 eV Total energy + Delta-G solvation = -2921.708669 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.24202 -40.14012 -37.45993 -35.63680 -34.91099 -32.71724 -31.61601 -31.08721 -28.14357 -26.78106 -23.56939 -23.04619 -22.25427 -21.11882 -19.22170 -17.88126 -17.14881 -17.00622 -16.35424 -16.28878 -15.94989 -15.47900 -14.74354 -14.52575 -14.38943 -14.26887 -13.58816 -13.14183 -13.08609 -12.94889 -12.65896 -12.58293 -12.38574 -12.25502 -12.12034 -12.00709 -11.80053 -11.55456 -11.04964 -10.12002 -9.80476 -9.59525 -9.42973 -8.65935 -6.78557 0.28258 0.36762 1.15447 1.35835 1.43204 1.57123 2.02900 2.23584 2.72825 3.14891 3.37914 3.70231 3.92383 4.08640 4.12777 4.28179 4.35903 4.44815 4.46313 4.47405 4.61415 4.75293 4.83637 5.03509 5.18698 5.20799 5.23009 5.32227 5.46859 5.74608 5.83577 5.93850 6.25022 6.65385 6.84110 7.96013 8.36652 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.033708 B = 0.004238 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.464260 B = 6605.519037 C = 7058.928013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.038 3.962 3 Si 1.001 2.999 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.386 3.614 10 N -0.702 5.702 11 C 0.050 3.950 12 H 0.047 0.953 13 C -0.052 4.052 14 C -0.060 4.060 15 C -0.102 4.102 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.044 4.044 19 Cl -0.072 7.072 20 C -0.122 4.122 21 C 0.009 3.991 22 O -0.343 6.343 23 H 0.291 0.709 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.152 0.848 28 H 0.152 0.848 29 H 0.138 0.862 30 H 0.067 0.933 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -11.264 1.404 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.182 4.182 3 Si 0.820 3.180 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.523 4.523 8 H 0.115 0.885 9 C 0.188 3.812 10 N -0.454 5.454 11 C -0.061 4.061 12 H 0.065 0.935 13 C -0.090 4.090 14 C -0.060 4.060 15 C -0.121 4.121 16 C -0.127 4.127 17 C -0.140 4.140 18 C -0.071 4.071 19 Cl -0.044 7.044 20 C -0.140 4.140 21 C -0.068 4.068 22 O -0.248 6.248 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.134 0.866 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.194 -11.590 1.255 12.389 hybrid contribution -0.849 0.574 -0.161 1.038 sum 3.345 -11.016 1.093 11.564 Atomic orbital electron populations 1.69808 1.09111 1.30977 1.33752 1.27031 0.95736 1.05068 0.90367 0.84974 0.78409 0.74266 0.80319 1.18237 1.18853 1.17954 1.19135 0.94713 0.87664 1.50817 0.88481 1.22282 0.78930 0.94908 0.85096 1.75547 1.26037 0.96770 1.47026 1.23038 0.90282 0.95797 0.97009 0.93537 1.20485 0.96246 0.94978 0.97309 1.19778 0.95388 0.93876 0.96951 1.21261 0.92572 0.98598 0.99629 1.21359 1.00023 0.94060 0.97258 1.21240 0.95336 0.98081 0.99308 1.20958 0.95220 0.91284 0.99590 1.98342 1.96461 1.38333 1.71216 1.21019 0.99147 0.94828 0.99033 1.24540 0.99577 0.82681 1.00027 1.87294 1.23667 1.31602 1.82274 0.89871 0.91949 0.88924 0.86617 0.83017 0.83037 0.84427 0.91522 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.04 11.82 21.87 0.26 -42.78 16 2 C 0.04 1.91 5.50 85.36 0.47 2.38 16 3 Si 1.00 37.77 29.56 68.60 2.03 39.80 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 5 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 7 C -0.49 -27.03 9.47 23.49 0.22 -26.81 16 8 H 0.10 5.25 7.85 -2.91 -0.02 5.23 16 9 C 0.39 21.85 7.38 85.61 0.63 22.48 16 10 N -0.70 -36.75 11.38 -435.96 -4.96 -41.71 16 11 C 0.05 2.16 3.69 45.39 0.17 2.33 16 12 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 13 C -0.05 -1.81 5.01 29.85 0.15 -1.66 16 14 C -0.06 -1.97 5.06 -19.87 -0.10 -2.07 16 15 C -0.10 -3.36 9.67 22.27 0.22 -3.14 16 16 C -0.11 -2.92 10.05 22.26 0.22 -2.70 16 17 C -0.12 -3.04 9.83 22.29 0.22 -2.82 16 18 C -0.04 -1.19 6.32 22.32 0.14 -1.05 16 19 Cl -0.07 -1.71 28.96 -2.72 -0.08 -1.79 16 20 C -0.12 -3.58 9.49 22.29 0.21 -3.37 16 21 C 0.01 0.40 7.70 72.59 0.56 0.96 16 22 O -0.34 -18.92 9.19 -84.78 -0.78 -19.70 16 23 H 0.29 13.82 8.29 -92.70 -0.77 13.05 16 24 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 25 H 0.09 2.59 8.08 -2.39 -0.02 2.57 16 26 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 27 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 29 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 30 H 0.07 2.68 7.92 -2.39 -0.02 2.66 16 31 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 Total: -1.00 -62.95 290.13 0.71 -62.24 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 1.14 Total: 19.41 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 3.11 Total: -15.46 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -4.70 Total: -84.49 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.78 Total: -19.70 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -62.95 0.71 -62.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616880.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.889 kcal (2) G-P(sol) polarization free energy of solvation -62.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds