Wall clock time and date at job start Mon Mar 30 2020 06:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.95166 * 300.69823 * 9 7 2 11 11 C 1.54856 * 111.07533 * 176.62907 * 9 7 2 12 12 N 1.47677 * 101.85929 * 218.80403 * 11 9 7 13 13 C 1.28635 * 108.56357 * 14.89633 * 12 11 9 14 14 C 1.50704 * 122.93745 * 180.44136 * 13 12 11 15 15 C 1.50694 * 109.47200 * 0.02562 * 14 13 12 16 16 C 1.38265 * 119.99303 * 269.72617 * 15 14 13 17 17 C 1.38219 * 120.02653 * 179.76784 * 16 15 14 18 18 C 1.38233 * 120.01263 * 0.50434 * 17 16 15 19 19 C 1.38333 * 119.98956 * 359.74725 * 18 17 16 20 20 Cl 1.73596 * 120.01766 * 180.02562 * 19 18 17 21 21 C 1.38194 * 119.99821 * 89.99924 * 15 14 13 22 22 O 1.34597 * 114.12384 * 0.44883 * 13 12 11 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.08999 * 110.94079 * 336.92216 * 11 9 7 25 25 H 1.09001 * 110.94382 * 100.62742 * 11 9 7 26 26 H 1.08999 * 109.46848 * 120.00384 * 14 13 12 27 27 H 1.09000 * 109.46855 * 240.00491 * 14 13 12 28 28 H 1.08000 * 119.98741 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.99258 * 180.25062 * 17 16 15 30 30 H 1.08000 * 120.01057 * 179.72197 * 18 17 16 31 31 H 1.08005 * 120.00311 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6058 -2.5728 0.8869 11 6 2.2218 -3.7030 -0.0675 12 7 1.4907 -4.6243 -0.9605 13 6 0.5509 -3.9686 -1.5449 14 6 -0.4040 -4.6020 -2.5237 15 6 -0.0693 -6.0631 -2.6782 16 6 0.8251 -6.4681 -3.6518 17 6 1.1363 -7.8076 -3.7910 18 6 0.5456 -8.7443 -2.9637 19 6 -0.3533 -8.3403 -1.9928 20 17 -1.0950 -9.5160 -0.9530 21 6 -0.6604 -6.9987 -1.8506 22 8 0.4952 -2.6672 -1.2059 23 1 -0.4850 0.8401 -0.0041 24 1 3.1740 -3.4074 -0.5081 25 1 2.3707 -4.1487 0.9160 26 1 -1.4242 -4.5004 -2.1534 27 1 -0.3169 -4.1048 -3.4898 28 1 1.2832 -5.7371 -4.3016 29 1 1.8381 -8.1228 -4.5490 30 1 0.7854 -9.7914 -3.0754 31 1 -1.3621 -6.6827 -1.0928 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260650399.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:39 Heat of formation + Delta-G solvation = -2.713160 kcal Electronic energy + Delta-G solvation = -16993.194261 eV Core-core repulsion = 14072.727384 eV Total energy + Delta-G solvation = -2920.466877 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.93558 -39.07742 -36.46221 -33.70457 -32.68685 -32.01318 -30.66134 -29.37212 -27.04326 -24.43707 -22.61253 -21.87267 -21.17725 -19.04492 -16.90022 -16.79092 -15.62014 -15.45309 -15.43465 -15.00270 -14.64823 -13.76455 -13.58801 -13.35167 -13.08664 -12.60946 -12.21953 -11.85856 -11.74115 -11.48754 -11.37998 -11.27978 -11.05155 -10.96898 -10.79406 -10.66779 -9.97805 -9.57667 -8.98694 -8.81006 -8.74641 -8.56120 -7.84021 -6.25667 -4.41764 1.25263 1.35331 2.16514 3.08562 3.21226 3.25861 3.28518 3.65607 4.24674 4.44262 4.71223 4.85928 5.05013 5.11903 5.32860 5.36055 5.45569 5.57084 5.83169 5.89997 5.96297 6.13382 6.26765 6.31685 6.37920 6.50804 6.62272 6.79336 6.89577 7.30722 7.53469 7.65263 8.01476 8.62869 8.92893 9.31662 10.81813 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.039519 B = 0.004106 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.352752 B = 6817.717560 C = 7006.521656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.079 3.921 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.184 3.816 10 H 0.050 0.950 11 C -0.001 4.001 12 N -0.567 5.567 13 C 0.285 3.715 14 C -0.011 4.011 15 C -0.039 4.039 16 C -0.097 4.097 17 C -0.108 4.108 18 C -0.118 4.118 19 C -0.033 4.033 20 Cl -0.081 7.081 21 C -0.093 4.093 22 O -0.328 6.328 23 H 0.267 0.733 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 -13.994 -6.597 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.130 3.870 10 H 0.067 0.933 11 C -0.131 4.131 12 N -0.307 5.307 13 C 0.060 3.940 14 C -0.049 4.049 15 C -0.040 4.040 16 C -0.115 4.115 17 C -0.126 4.126 18 C -0.136 4.136 19 C -0.059 4.059 20 Cl -0.052 7.052 21 C -0.112 4.112 22 O -0.230 6.230 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.868 -14.557 -6.478 16.043 hybrid contribution 0.383 1.566 0.426 1.668 sum -1.485 -12.991 -6.052 14.408 Atomic orbital electron populations 1.70006 1.06242 1.27497 1.45843 1.25156 0.94915 0.99839 0.92970 0.86506 0.79646 0.82022 0.79009 1.19819 1.20884 1.19751 1.20965 0.92903 0.89168 1.54206 0.91198 1.21713 0.88199 0.94481 0.82591 0.93261 1.23998 0.99458 0.92423 0.97193 1.74616 1.09189 1.31313 1.15609 1.25157 0.92201 0.83840 0.92829 1.19153 0.97435 0.90190 0.98135 1.19349 0.95914 0.94008 0.94692 1.21095 0.96417 0.95976 0.97983 1.21002 0.99613 0.92759 0.99264 1.20945 0.96990 1.00256 0.95432 1.20800 0.99334 0.90116 0.95654 1.98352 1.81793 1.58364 1.66717 1.20861 1.00641 0.90564 0.99089 1.87388 1.71012 1.21250 1.43360 0.92324 0.90732 0.90791 0.88047 0.87997 0.85554 0.85375 0.85454 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 13.10 55.43 0.73 -23.97 16 2 C 0.08 2.16 5.44 -17.82 -0.10 2.07 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.79 8.83 -34.44 -0.30 -15.09 16 8 H 0.07 1.86 7.64 -52.49 -0.40 1.46 16 9 C 0.18 4.82 3.53 -26.91 -0.09 4.73 16 10 H 0.05 1.37 8.14 -51.93 -0.42 0.94 16 11 C 0.00 -0.03 7.69 -2.42 -0.02 -0.05 16 12 N -0.57 -12.30 10.78 -56.93 -0.61 -12.92 16 13 C 0.29 6.02 7.68 -13.61 -0.10 5.92 16 14 C -0.01 -0.17 5.97 -29.04 -0.17 -0.35 16 15 C -0.04 -0.56 4.44 -104.63 -0.46 -1.02 16 16 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 17 C -0.11 -1.23 10.05 -39.59 -0.40 -1.63 16 18 C -0.12 -1.38 9.83 -39.55 -0.39 -1.77 16 19 C -0.03 -0.43 6.32 -39.50 -0.25 -0.68 16 20 Cl -0.08 -0.99 28.96 -51.86 -1.50 -2.49 16 21 C -0.09 -1.31 9.49 -39.55 -0.38 -1.68 16 22 O -0.33 -8.47 10.64 -15.57 -0.17 -8.63 16 23 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.07 1.70 7.79 -51.93 -0.40 1.30 16 25 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 26 H 0.10 1.41 8.08 -51.93 -0.42 0.99 16 27 H 0.10 1.38 8.08 -51.93 -0.42 0.96 16 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 291.72 15.07 4.40 4.40 Total: -1.00 -30.54 291.72 -8.55 -39.09 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.32 Total: 0.05 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -3.05 Total: -11.19 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.11 Total: -36.89 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.17 Total: -8.63 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.54 -8.55 -39.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650399.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.376 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds