Wall clock time and date at job start Mon Mar 30 2020 06:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.95166 * 300.69823 * 9 7 2 11 11 C 1.54856 * 111.07533 * 176.62907 * 9 7 2 12 12 N 1.47677 * 101.85929 * 218.80403 * 11 9 7 13 13 C 1.28635 * 108.56357 * 14.89633 * 12 11 9 14 14 C 1.50704 * 122.93745 * 180.44136 * 13 12 11 15 15 C 1.50694 * 109.47200 * 0.02562 * 14 13 12 16 16 C 1.38265 * 119.99303 * 269.72617 * 15 14 13 17 17 C 1.38219 * 120.02653 * 179.76784 * 16 15 14 18 18 C 1.38233 * 120.01263 * 0.50434 * 17 16 15 19 19 C 1.38333 * 119.98956 * 359.74725 * 18 17 16 20 20 Cl 1.73596 * 120.01766 * 180.02562 * 19 18 17 21 21 C 1.38194 * 119.99821 * 89.99924 * 15 14 13 22 22 O 1.34597 * 114.12384 * 0.44883 * 13 12 11 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.08999 * 110.94079 * 336.92216 * 11 9 7 25 25 H 1.09001 * 110.94382 * 100.62742 * 11 9 7 26 26 H 1.08999 * 109.46848 * 120.00384 * 14 13 12 27 27 H 1.09000 * 109.46855 * 240.00491 * 14 13 12 28 28 H 1.08000 * 119.98741 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.99258 * 180.25062 * 17 16 15 30 30 H 1.08000 * 120.01057 * 179.72197 * 18 17 16 31 31 H 1.08005 * 120.00311 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6058 -2.5728 0.8869 11 6 2.2218 -3.7030 -0.0675 12 7 1.4907 -4.6243 -0.9605 13 6 0.5509 -3.9686 -1.5449 14 6 -0.4040 -4.6020 -2.5237 15 6 -0.0693 -6.0631 -2.6782 16 6 0.8251 -6.4681 -3.6518 17 6 1.1363 -7.8076 -3.7910 18 6 0.5456 -8.7443 -2.9637 19 6 -0.3533 -8.3403 -1.9928 20 17 -1.0950 -9.5160 -0.9530 21 6 -0.6604 -6.9987 -1.8506 22 8 0.4952 -2.6672 -1.2059 23 1 -0.4850 0.8401 -0.0041 24 1 3.1740 -3.4074 -0.5081 25 1 2.3707 -4.1487 0.9160 26 1 -1.4242 -4.5004 -2.1534 27 1 -0.3169 -4.1048 -3.4898 28 1 1.2832 -5.7371 -4.3016 29 1 1.8381 -8.1228 -4.5490 30 1 0.7854 -9.7914 -3.0754 31 1 -1.3621 -6.6827 -1.0928 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260650399.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:39 Heat of formation + Delta-G solvation = -22.801778 kcal Electronic energy + Delta-G solvation = -16994.065369 eV Core-core repulsion = 14072.727384 eV Total energy + Delta-G solvation = -2921.337985 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.66849 -40.18496 -37.43923 -35.32866 -34.46976 -33.71828 -31.63912 -31.02867 -28.50954 -26.30085 -23.57980 -23.30147 -22.84259 -20.64175 -18.94759 -17.82889 -17.18463 -17.04367 -16.71355 -16.43792 -16.29930 -15.36386 -14.72377 -14.44641 -14.27090 -14.16008 -13.78176 -13.63228 -13.47832 -12.99487 -12.80700 -12.52044 -12.41142 -12.29719 -12.27548 -11.87597 -11.75422 -11.50768 -10.83648 -10.79887 -9.82387 -9.70231 -9.56788 -8.32813 -6.57904 0.25947 0.36870 1.19358 1.37965 1.40069 1.43333 1.50983 2.32600 2.51486 2.86726 3.25439 3.39725 3.84175 3.92673 4.15070 4.17487 4.32148 4.37878 4.43981 4.56606 4.64867 4.68256 4.85821 4.94680 5.03287 5.30451 5.31414 5.43194 5.54334 5.61058 5.72300 5.92027 6.02323 6.54983 7.09284 7.21890 8.75644 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.039519 B = 0.004106 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.352752 B = 6817.717560 C = 7006.521656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.561 4.561 8 H 0.074 0.926 9 C 0.178 3.822 10 H 0.020 0.980 11 C 0.006 3.994 12 N -0.567 5.567 13 C 0.282 3.718 14 C -0.007 4.007 15 C -0.055 4.055 16 C -0.104 4.104 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.045 4.045 20 Cl -0.078 7.078 21 C -0.108 4.108 22 O -0.356 6.356 23 H 0.270 0.730 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.160 0.840 30 H 0.151 0.849 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 -14.645 -7.793 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.597 4.597 8 H 0.092 0.908 9 C 0.124 3.876 10 H 0.038 0.962 11 C -0.124 4.124 12 N -0.306 5.306 13 C 0.057 3.943 14 C -0.044 4.044 15 C -0.055 4.055 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.133 4.133 19 C -0.071 4.071 20 Cl -0.049 7.049 21 C -0.126 4.126 22 O -0.259 6.259 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.132 0.868 27 H 0.141 0.859 28 H 0.155 0.845 29 H 0.178 0.822 30 H 0.169 0.831 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.899 -15.238 -7.672 17.084 hybrid contribution 0.051 1.645 0.784 1.823 sum -0.848 -13.593 -6.888 15.262 Atomic orbital electron populations 1.70125 1.07882 1.28568 1.46794 1.26066 0.95766 1.03589 0.92195 0.85382 0.78328 0.77200 0.79403 1.19230 1.20250 1.18636 1.21312 0.93345 0.90285 1.54807 0.90841 1.21562 0.88360 0.95682 0.82019 0.96215 1.23908 0.98766 0.91476 0.98234 1.74622 1.09596 1.30628 1.15721 1.26094 0.92758 0.82241 0.93236 1.19334 0.96529 0.91027 0.97558 1.19280 0.97293 0.93026 0.95931 1.21340 0.95962 0.97173 0.97730 1.21371 0.99407 0.91926 0.99423 1.21296 0.95903 1.01657 0.94472 1.20955 0.99920 0.89914 0.96315 1.98351 1.81817 1.57998 1.66711 1.20918 1.01107 0.91294 0.99319 1.87303 1.71341 1.24026 1.43212 0.92100 0.90737 0.89582 0.86843 0.85935 0.84467 0.82224 0.83124 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.41 13.10 21.45 0.28 -52.13 16 2 C 0.03 1.54 5.44 84.66 0.46 2.00 16 3 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.56 -31.41 8.83 25.60 0.23 -31.18 16 8 H 0.07 3.94 7.64 -2.91 -0.02 3.91 16 9 C 0.18 9.58 3.53 30.48 0.11 9.69 16 10 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 11 C 0.01 0.26 7.69 86.79 0.67 0.93 16 12 N -0.57 -24.41 10.78 -449.25 -4.85 -29.25 16 13 C 0.28 11.89 7.68 88.58 0.68 12.57 16 14 C -0.01 -0.20 5.97 29.10 0.17 -0.03 16 15 C -0.05 -1.50 4.44 -19.87 -0.09 -1.59 16 16 C -0.10 -2.46 9.70 22.27 0.22 -2.24 16 17 C -0.10 -2.04 10.05 22.26 0.22 -1.81 16 18 C -0.11 -2.38 9.83 22.29 0.22 -2.16 16 19 C -0.04 -1.10 6.32 22.32 0.14 -0.96 16 20 Cl -0.08 -1.80 28.96 -2.72 -0.08 -1.88 16 21 C -0.11 -2.95 9.49 22.29 0.21 -2.73 16 22 O -0.36 -18.71 10.64 -78.62 -0.84 -19.55 16 23 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 24 H 0.07 3.40 7.79 -2.39 -0.02 3.38 16 25 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 26 H 0.11 3.12 8.08 -2.39 -0.02 3.10 16 27 H 0.12 3.16 8.08 -2.39 -0.02 3.14 16 28 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 29 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -65.67 291.72 0.92 -64.75 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.14 Total: 11.20 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.24 Total: -17.53 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -4.56 Total: -81.38 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.84 Total: -19.55 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -65.67 0.92 -64.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650399.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.944 kcal (2) G-P(sol) polarization free energy of solvation -65.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds