Wall clock time and date at job start Mon Mar 30 2020 06:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09001 * 110.94441 * 55.64904 * 9 7 2 11 11 C 1.54847 * 111.07823 * 179.72165 * 9 7 2 12 12 N 1.47598 * 101.89749 * 141.22057 * 11 9 7 13 13 C 1.28643 * 108.54465 * 345.04639 * 12 11 9 14 14 C 1.50702 * 122.93642 * 179.58682 * 13 12 11 15 15 C 1.50699 * 109.47041 * 359.97438 * 14 13 12 16 16 C 1.38266 * 119.99054 * 269.72075 * 15 14 13 17 17 C 1.38226 * 120.02326 * 179.77113 * 16 15 14 18 18 C 1.38239 * 120.01416 * 0.50481 * 17 16 15 19 19 C 1.38332 * 119.98247 * 359.75025 * 18 17 16 20 20 Cl 1.73599 * 120.00862 * 179.97438 * 19 18 17 21 21 C 1.38193 * 119.99702 * 89.99891 * 15 14 13 22 22 O 1.34590 * 114.12161 * 359.59567 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.94462 * 259.37698 * 11 9 7 25 25 H 1.09006 * 110.94577 * 23.02959 * 11 9 7 26 26 H 1.09001 * 109.46663 * 119.97917 * 14 13 12 27 27 H 1.08994 * 109.47221 * 239.98019 * 14 13 12 28 28 H 1.07998 * 119.98896 * 359.97438 * 16 15 14 29 29 H 1.08005 * 119.99102 * 180.23339 * 17 16 15 30 30 H 1.07994 * 120.00464 * 179.77116 * 18 17 16 31 31 H 1.08004 * 120.00262 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.5623 -2.5477 -0.8489 11 6 2.2237 -3.7040 -0.0106 12 7 1.5388 -4.6521 0.8897 13 6 0.6306 -4.0147 1.5407 14 6 -0.2735 -4.6777 2.5478 15 6 0.0678 -6.1426 2.6414 16 6 -0.5702 -7.0547 1.8211 17 6 -0.2542 -8.3978 1.9031 18 6 0.6923 -8.8313 2.8126 19 6 1.3271 -7.9198 3.6371 20 17 2.5154 -8.4635 4.7799 21 6 1.0142 -6.5747 3.5510 22 8 0.5583 -2.7040 1.2435 23 1 -0.4850 0.8401 -0.0004 24 1 2.3226 -4.1206 -1.0131 25 1 3.1974 -3.4204 0.3890 26 1 -0.1364 -4.2096 3.5225 27 1 -1.3111 -4.5659 2.2336 28 1 -1.3132 -6.7171 1.1138 29 1 -0.7502 -9.1094 1.2595 30 1 0.9364 -9.8812 2.8791 31 1 1.5095 -5.8626 4.1944 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260650403.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:41 Heat of formation + Delta-G solvation = -3.198557 kcal Electronic energy + Delta-G solvation = -16982.441589 eV Core-core repulsion = 14061.953664 eV Total energy + Delta-G solvation = -2920.487925 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.94333 -39.08129 -36.46337 -33.70883 -32.70664 -32.02292 -30.66240 -29.37576 -27.04747 -24.44430 -22.61512 -21.87295 -21.18670 -19.04813 -16.92907 -16.79051 -15.63047 -15.46074 -15.41434 -15.02895 -14.64657 -13.83517 -13.50664 -13.35094 -13.10190 -12.64038 -12.21410 -11.86197 -11.74179 -11.48535 -11.38291 -11.28564 -11.06323 -11.00139 -10.79545 -10.63644 -9.98819 -9.55167 -8.99297 -8.81004 -8.76939 -8.56677 -7.84454 -6.27640 -4.43285 1.24934 1.35223 2.16378 3.07967 3.18184 3.26332 3.30830 3.65231 4.23800 4.43473 4.70803 4.85658 5.04252 5.11313 5.32025 5.37807 5.46152 5.54745 5.84969 5.88255 5.96114 6.13122 6.26695 6.31370 6.37821 6.50862 6.62006 6.79193 6.89644 7.30407 7.53061 7.64498 8.01247 8.63462 8.92013 9.30439 10.79991 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035043 B = 0.004198 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.827209 B = 6669.034638 C = 7000.469489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.071 0.929 9 C 0.183 3.817 10 H 0.052 0.948 11 C -0.001 4.001 12 N -0.567 5.567 13 C 0.285 3.715 14 C -0.011 4.011 15 C -0.039 4.039 16 C -0.097 4.097 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.033 4.033 20 Cl -0.081 7.081 21 C -0.092 4.092 22 O -0.332 6.332 23 H 0.266 0.734 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 -14.268 6.158 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.129 3.871 10 H 0.070 0.930 11 C -0.131 4.131 12 N -0.307 5.307 13 C 0.060 3.940 14 C -0.049 4.049 15 C -0.040 4.040 16 C -0.116 4.116 17 C -0.126 4.126 18 C -0.136 4.136 19 C -0.059 4.059 20 Cl -0.052 7.052 21 C -0.111 4.111 22 O -0.234 6.234 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.575 -14.776 6.211 16.106 hybrid contribution 0.544 1.649 -0.178 1.745 sum -1.031 -13.128 6.033 14.485 Atomic orbital electron populations 1.70019 1.06273 1.27340 1.46094 1.25170 0.94924 0.99928 0.92924 0.86382 0.80236 0.82625 0.77914 1.19335 1.20534 1.20529 1.21050 0.92992 0.89133 1.53718 0.91138 1.21741 0.89309 0.94354 0.81714 0.93018 1.23978 0.99734 0.92122 0.97252 1.74606 1.10482 1.31327 1.14259 1.25145 0.91930 0.83872 0.93062 1.19158 0.98121 0.89906 0.97749 1.19349 0.95332 0.94452 0.94839 1.21097 0.99737 0.92847 0.97871 1.21005 0.97570 0.95888 0.98171 1.20946 0.97324 0.99193 0.96160 1.20803 0.95297 0.94235 0.95566 1.98352 1.56854 1.90209 1.59824 1.20860 0.97241 0.93617 0.99358 1.87380 1.73376 1.20517 1.42098 0.92406 0.90778 0.90744 0.88127 0.87920 0.85561 0.85366 0.85450 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.67 13.23 55.43 0.73 -23.94 16 2 C 0.08 2.14 5.46 -17.82 -0.10 2.04 16 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.71 8.83 -34.44 -0.30 -15.01 16 8 H 0.07 1.90 7.61 -52.49 -0.40 1.50 16 9 C 0.18 4.77 3.48 -26.91 -0.09 4.68 16 10 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 11 C 0.00 -0.03 7.68 -2.47 -0.02 -0.05 16 12 N -0.57 -12.28 10.78 -56.98 -0.61 -12.89 16 13 C 0.29 6.01 7.68 -13.61 -0.10 5.91 16 14 C -0.01 -0.17 5.97 -29.03 -0.17 -0.35 16 15 C -0.04 -0.56 4.44 -104.63 -0.46 -1.02 16 16 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 17 C -0.11 -1.23 10.05 -39.59 -0.40 -1.63 16 18 C -0.12 -1.37 9.83 -39.55 -0.39 -1.76 16 19 C -0.03 -0.43 6.32 -39.50 -0.25 -0.68 16 20 Cl -0.08 -0.99 28.96 -51.86 -1.50 -2.49 16 21 C -0.09 -1.29 9.49 -39.55 -0.38 -1.67 16 22 O -0.33 -8.54 10.82 -15.55 -0.17 -8.71 16 23 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 25 H 0.07 1.71 7.77 -51.93 -0.40 1.31 16 26 H 0.10 1.39 8.09 -51.93 -0.42 0.97 16 27 H 0.10 1.39 8.08 -51.93 -0.42 0.97 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -30.57 291.95 -8.54 -39.11 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.31 Total: 0.01 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -3.05 Total: -11.18 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.12 Total: -36.83 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.17 Total: -8.71 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.57 -8.54 -39.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650403.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.909 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds