Wall clock time and date at job start Mon Mar 30 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09001 * 110.94441 * 55.64904 * 9 7 2 11 11 C 1.54847 * 111.07823 * 179.72165 * 9 7 2 12 12 N 1.47598 * 101.89749 * 141.22057 * 11 9 7 13 13 C 1.28643 * 108.54465 * 345.04639 * 12 11 9 14 14 C 1.50702 * 122.93642 * 179.58682 * 13 12 11 15 15 C 1.50699 * 109.47041 * 359.97438 * 14 13 12 16 16 C 1.38266 * 119.99054 * 269.72075 * 15 14 13 17 17 C 1.38226 * 120.02326 * 179.77113 * 16 15 14 18 18 C 1.38239 * 120.01416 * 0.50481 * 17 16 15 19 19 C 1.38332 * 119.98247 * 359.75025 * 18 17 16 20 20 Cl 1.73599 * 120.00862 * 179.97438 * 19 18 17 21 21 C 1.38193 * 119.99702 * 89.99891 * 15 14 13 22 22 O 1.34590 * 114.12161 * 359.59567 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.94462 * 259.37698 * 11 9 7 25 25 H 1.09006 * 110.94577 * 23.02959 * 11 9 7 26 26 H 1.09001 * 109.46663 * 119.97917 * 14 13 12 27 27 H 1.08994 * 109.47221 * 239.98019 * 14 13 12 28 28 H 1.07998 * 119.98896 * 359.97438 * 16 15 14 29 29 H 1.08005 * 119.99102 * 180.23339 * 17 16 15 30 30 H 1.07994 * 120.00464 * 179.77116 * 18 17 16 31 31 H 1.08004 * 120.00262 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.5623 -2.5477 -0.8489 11 6 2.2237 -3.7040 -0.0106 12 7 1.5388 -4.6521 0.8897 13 6 0.6306 -4.0147 1.5407 14 6 -0.2735 -4.6777 2.5478 15 6 0.0678 -6.1426 2.6414 16 6 -0.5702 -7.0547 1.8211 17 6 -0.2542 -8.3978 1.9031 18 6 0.6923 -8.8313 2.8126 19 6 1.3271 -7.9198 3.6371 20 17 2.5154 -8.4635 4.7799 21 6 1.0142 -6.5747 3.5510 22 8 0.5583 -2.7040 1.2435 23 1 -0.4850 0.8401 -0.0004 24 1 2.3226 -4.1206 -1.0131 25 1 3.1974 -3.4204 0.3890 26 1 -0.1364 -4.2096 3.5225 27 1 -1.3111 -4.5659 2.2336 28 1 -1.3132 -6.7171 1.1138 29 1 -0.7502 -9.1094 1.2595 30 1 0.9364 -9.8812 2.8791 31 1 1.5095 -5.8626 4.1944 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260650403.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:40 Heat of formation + Delta-G solvation = -23.318925 kcal Electronic energy + Delta-G solvation = -16983.314074 eV Core-core repulsion = 14061.953664 eV Total energy + Delta-G solvation = -2921.360410 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.67526 -40.18478 -37.43675 -35.33655 -34.48575 -33.72357 -31.63653 -31.03033 -28.51263 -26.30620 -23.58495 -23.29567 -22.84801 -20.64155 -18.97450 -17.83539 -17.18651 -17.04110 -16.72241 -16.41735 -16.32601 -15.37716 -14.69153 -14.43974 -14.33238 -14.14013 -13.76910 -13.62910 -13.49360 -12.99739 -12.86078 -12.48415 -12.42331 -12.30265 -12.26222 -11.88664 -11.74423 -11.48776 -10.86321 -10.80450 -9.80022 -9.73481 -9.55978 -8.34817 -6.59372 0.25801 0.37067 1.19464 1.36646 1.38496 1.41858 1.52918 2.31459 2.50836 2.85542 3.25671 3.40183 3.83883 3.93452 4.15355 4.18626 4.30968 4.37662 4.43646 4.56333 4.65645 4.68366 4.85230 4.95499 5.03350 5.30195 5.31926 5.43082 5.53843 5.60763 5.72180 5.91949 6.02412 6.54892 7.09061 7.20480 8.74095 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035043 B = 0.004198 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.827209 B = 6669.034638 C = 7000.469489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.071 0.929 9 C 0.178 3.822 10 H 0.025 0.975 11 C 0.005 3.995 12 N -0.566 5.566 13 C 0.282 3.718 14 C -0.007 4.007 15 C -0.055 4.055 16 C -0.105 4.105 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.044 4.044 20 Cl -0.077 7.077 21 C -0.106 4.106 22 O -0.359 6.359 23 H 0.271 0.729 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.136 0.864 29 H 0.160 0.840 30 H 0.151 0.849 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -15.197 6.400 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.124 3.876 10 H 0.043 0.957 11 C -0.124 4.124 12 N -0.305 5.305 13 C 0.057 3.943 14 C -0.045 4.045 15 C -0.055 4.055 16 C -0.123 4.123 17 C -0.121 4.121 18 C -0.133 4.133 19 C -0.071 4.071 20 Cl -0.049 7.049 21 C -0.125 4.125 22 O -0.263 6.263 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.089 0.911 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.154 0.846 29 H 0.177 0.823 30 H 0.169 0.831 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.443 -15.733 6.454 17.066 hybrid contribution 0.476 1.816 -0.235 1.892 sum -0.967 -13.917 6.219 15.274 Atomic orbital electron populations 1.70122 1.07836 1.28513 1.46946 1.26058 0.95784 1.03582 0.92163 0.85280 0.78977 0.77839 0.78210 1.18646 1.19471 1.20113 1.21366 0.93290 0.90360 1.54453 0.91100 1.21584 0.89361 0.95431 0.81273 0.95689 1.23889 0.98867 0.91258 0.98417 1.74614 1.10887 1.30627 1.14416 1.26084 0.92301 0.82298 0.93580 1.19342 0.97794 0.90571 0.96763 1.19281 0.96458 0.93768 0.96030 1.21339 0.99839 0.93500 0.97669 1.21370 0.97015 0.95782 0.97983 1.21295 0.96590 1.00170 0.95281 1.20957 0.95760 0.94230 0.96145 1.98351 1.56716 1.90055 1.59738 1.20921 0.97594 0.94256 0.99727 1.87294 1.73731 1.23315 1.41919 0.92034 0.89359 0.91106 0.86693 0.86016 0.84569 0.82263 0.83132 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.16 13.23 21.45 0.28 -51.88 16 2 C 0.03 1.55 5.46 84.66 0.46 2.01 16 3 Si 0.97 42.54 29.54 68.60 2.03 44.57 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.56 -31.34 8.83 25.60 0.23 -31.12 16 8 H 0.07 3.86 7.61 -2.91 -0.02 3.83 16 9 C 0.18 9.52 3.48 30.48 0.11 9.63 16 10 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 11 C 0.01 0.24 7.68 86.80 0.67 0.91 16 12 N -0.57 -24.37 10.78 -449.43 -4.85 -29.22 16 13 C 0.28 11.88 7.68 88.58 0.68 12.56 16 14 C -0.01 -0.21 5.97 29.10 0.17 -0.04 16 15 C -0.05 -1.50 4.44 -19.87 -0.09 -1.59 16 16 C -0.11 -2.50 9.70 22.27 0.22 -2.28 16 17 C -0.10 -2.05 10.05 22.27 0.22 -1.82 16 18 C -0.11 -2.38 9.83 22.29 0.22 -2.16 16 19 C -0.04 -1.09 6.32 22.32 0.14 -0.95 16 20 Cl -0.08 -1.78 28.96 -2.72 -0.08 -1.86 16 21 C -0.11 -2.88 9.49 22.29 0.21 -2.67 16 22 O -0.36 -18.84 10.82 -78.55 -0.85 -19.69 16 23 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 24 H 0.09 3.73 8.14 -2.39 -0.02 3.71 16 25 H 0.07 3.28 7.77 -2.38 -0.02 3.26 16 26 H 0.11 3.09 8.09 -2.39 -0.02 3.07 16 27 H 0.12 3.16 8.08 -2.39 -0.02 3.14 16 28 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 30 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -65.59 291.95 0.91 -64.68 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.14 Total: 10.93 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.24 Total: -17.53 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -4.56 Total: -81.09 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.85 Total: -19.69 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.08 Total: -1.86 kcal Total: -65.59 0.91 -64.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650403.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.358 kcal (2) G-P(sol) polarization free energy of solvation -65.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds