Wall clock time and date at job start Mon Mar 30 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.28643 * 122.93512 * 359.70898 * 10 9 7 12 12 C 1.47610 * 108.54417 * 179.44115 * 11 10 9 13 13 C 1.54850 * 101.94897 * 345.42141 * 12 11 10 14 14 H 1.09004 * 111.10625 * 265.03245 * 13 12 11 15 15 C 1.50698 * 111.07624 * 141.01154 * 13 12 11 16 16 C 1.38246 * 119.98791 * 286.46117 * 15 13 12 17 17 C 1.38209 * 120.01034 * 179.72625 * 16 15 13 18 18 C 1.38346 * 119.99040 * 0.54432 * 17 16 15 19 19 Cl 1.73602 * 120.01520 * 179.74787 * 18 17 16 20 20 C 1.38355 * 119.97427 * 359.72900 * 18 17 16 21 21 C 1.38220 * 119.98321 * 359.97438 * 20 18 17 22 22 O 1.34589 * 122.94351 * 179.97438 * 10 9 7 23 23 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 25 25 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 26 26 H 1.08996 * 111.09822 * 227.16619 * 12 11 10 27 27 H 1.09004 * 110.76387 * 103.52512 * 12 11 10 28 28 H 1.08001 * 119.99070 * 0.02562 * 16 15 13 29 29 H 1.08008 * 120.00417 * 180.27329 * 17 16 15 30 30 H 1.08001 * 120.01005 * 179.97438 * 20 18 17 31 31 H 1.08004 * 119.98782 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2300 -3.6447 0.0133 11 7 3.5052 -3.4749 0.0132 12 6 4.1553 -4.7999 0.0352 13 6 2.9794 -5.7274 0.4287 14 1 2.9621 -5.9046 1.5041 15 6 3.0373 -7.0278 -0.3307 16 6 2.7037 -7.0602 -1.6720 17 6 2.7620 -8.2514 -2.3703 18 6 3.1436 -9.4138 -1.7242 19 17 3.2108 -10.9117 -2.5991 20 6 3.4719 -9.3819 -0.3805 21 6 3.4190 -8.1888 0.3153 22 8 1.8470 -4.9349 0.0155 23 1 -0.4851 -0.8400 -0.0004 24 1 0.6205 -2.5547 0.8933 25 1 0.6280 -2.5591 -0.8867 26 1 4.9473 -4.8360 0.7831 27 1 4.5414 -5.0573 -0.9511 28 1 2.4020 -6.1534 -2.1753 29 1 2.5056 -8.2758 -3.4192 30 1 3.7694 -10.2890 0.1245 31 1 3.6757 -8.1637 1.3641 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260669571.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:04 Heat of formation + Delta-G solvation = -0.312530 kcal Electronic energy + Delta-G solvation = -16785.452983 eV Core-core repulsion = 13865.090205 eV Total energy + Delta-G solvation = -2920.362778 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.01821 -39.22683 -36.73941 -34.02312 -32.94854 -32.32497 -31.34445 -29.53989 -26.78143 -23.63491 -23.31996 -23.07879 -21.31216 -19.70837 -17.59825 -16.74894 -16.54857 -16.09813 -15.47898 -15.06521 -14.46680 -13.81072 -13.75554 -13.69996 -13.26196 -12.92970 -12.50652 -12.42239 -12.10784 -11.90018 -11.74984 -11.36034 -11.16722 -11.06274 -10.63896 -10.55709 -10.07565 -9.65198 -9.31110 -8.83405 -8.65460 -8.58436 -8.32451 -6.39554 -4.09592 0.79611 1.02650 1.84489 2.83457 3.26145 3.47422 3.50661 3.66334 3.73115 4.47694 4.49718 4.56613 4.59040 4.66119 4.95899 5.06492 5.18623 5.29590 5.37121 5.39481 5.63110 5.68896 5.80840 5.91564 5.96607 6.17903 6.41378 6.50092 6.81971 7.01740 7.02999 7.91846 8.50472 8.57694 8.87425 9.59744 11.00360 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.051180 B = 0.003489 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.952827 B = 8023.519254 C = 8168.776790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 1.080 2.920 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.590 4.590 8 H 0.077 0.923 9 C 0.072 3.928 10 C 0.326 3.674 11 N -0.527 5.527 12 C -0.003 4.003 13 C 0.083 3.917 14 H 0.097 0.903 15 C -0.073 4.073 16 C -0.081 4.081 17 C -0.109 4.109 18 C -0.034 4.034 19 Cl -0.074 7.074 20 C -0.111 4.111 21 C -0.095 4.095 22 O -0.346 6.346 23 H 0.268 0.732 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.755 -19.591 -1.536 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.188 4.188 3 Si 0.908 3.092 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.629 4.629 8 H 0.096 0.904 9 C 0.035 3.965 10 C 0.102 3.898 11 N -0.262 5.262 12 C -0.133 4.133 13 C 0.024 3.976 14 H 0.115 0.885 15 C -0.074 4.074 16 C -0.099 4.099 17 C -0.128 4.128 18 C -0.061 4.061 19 Cl -0.045 7.045 20 C -0.130 4.130 21 C -0.113 4.113 22 O -0.251 6.251 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.068 -17.585 -1.681 19.027 hybrid contribution -0.076 -2.730 -0.020 2.731 sum 6.992 -20.315 -1.700 21.551 Atomic orbital electron populations 1.70758 1.06920 1.30511 1.47014 1.25910 0.96407 1.02811 0.93683 0.83377 0.74640 0.74312 0.76845 1.21228 1.21389 1.21405 1.22048 0.96001 0.89560 1.55261 0.90443 1.18310 0.91976 0.87676 0.98581 1.26636 0.93335 0.83581 0.86283 1.75036 1.05654 1.19564 1.25913 1.24187 0.97748 0.88789 1.02535 1.22840 0.86754 0.89699 0.98265 0.88539 1.19700 0.99585 0.93793 0.94300 1.21036 0.97252 0.98051 0.93602 1.21074 1.00078 0.90885 1.00723 1.20967 1.04489 0.87492 0.93111 1.98369 1.97003 1.32793 1.76346 1.20978 1.00839 0.98804 0.92336 1.20899 0.99341 0.90866 1.00201 1.87036 1.37858 1.17832 1.82384 0.92212 0.93928 0.93948 0.88836 0.89953 0.84628 0.84651 0.84673 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 13.65 55.43 0.76 -26.48 16 2 C 0.01 0.42 5.46 -17.82 -0.10 0.33 16 3 Si 1.08 25.36 29.90 -169.99 -5.08 20.28 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.59 -16.59 8.95 -34.44 -0.31 -16.90 16 8 H 0.08 2.23 6.77 -52.49 -0.36 1.88 16 9 C 0.07 1.82 4.91 -29.04 -0.14 1.68 16 10 C 0.33 7.26 7.68 -13.61 -0.10 7.16 16 11 N -0.53 -11.57 10.21 -56.98 -0.58 -12.15 16 12 C 0.00 -0.05 7.66 -2.46 -0.02 -0.07 16 13 C 0.08 1.25 3.96 -26.91 -0.11 1.15 16 14 H 0.10 1.31 8.05 -51.93 -0.42 0.89 16 15 C -0.07 -0.94 5.05 -104.62 -0.53 -1.47 16 16 C -0.08 -1.05 9.20 -39.59 -0.36 -1.41 16 17 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 18 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 19 Cl -0.07 -0.71 28.96 -51.86 -1.50 -2.21 16 20 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 21 C -0.09 -0.98 9.69 -39.59 -0.38 -1.37 16 22 O -0.35 -6.68 10.26 -15.55 -0.16 -6.84 16 23 H 0.27 7.82 7.22 -40.82 -0.29 7.53 16 24 H 0.04 1.09 8.00 -51.93 -0.42 0.68 16 25 H 0.04 1.09 8.01 -51.93 -0.42 0.67 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.08 1.28 7.77 -51.93 -0.40 0.88 16 28 H 0.14 1.88 7.79 -52.49 -0.41 1.47 16 29 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.08 8.05 -52.48 -0.42 0.66 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -30.60 288.76 -8.50 -39.09 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -3.20 Total: -1.46 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -3.08 Total: -14.59 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.18 Total: -38.62 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.16 Total: -6.84 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.60 -8.50 -39.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260669571.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.779 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds