Wall clock time and date at job start Mon Mar 30 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.28643 * 122.93512 * 359.70898 * 10 9 7 12 12 C 1.47610 * 108.54417 * 179.44115 * 11 10 9 13 13 C 1.54850 * 101.94897 * 345.42141 * 12 11 10 14 14 H 1.09004 * 111.10625 * 265.03245 * 13 12 11 15 15 C 1.50698 * 111.07624 * 141.01154 * 13 12 11 16 16 C 1.38246 * 119.98791 * 286.46117 * 15 13 12 17 17 C 1.38209 * 120.01034 * 179.72625 * 16 15 13 18 18 C 1.38346 * 119.99040 * 0.54432 * 17 16 15 19 19 Cl 1.73602 * 120.01520 * 179.74787 * 18 17 16 20 20 C 1.38355 * 119.97427 * 359.72900 * 18 17 16 21 21 C 1.38220 * 119.98321 * 359.97438 * 20 18 17 22 22 O 1.34589 * 122.94351 * 179.97438 * 10 9 7 23 23 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 25 25 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 26 26 H 1.08996 * 111.09822 * 227.16619 * 12 11 10 27 27 H 1.09004 * 110.76387 * 103.52512 * 12 11 10 28 28 H 1.08001 * 119.99070 * 0.02562 * 16 15 13 29 29 H 1.08008 * 120.00417 * 180.27329 * 17 16 15 30 30 H 1.08001 * 120.01005 * 179.97438 * 20 18 17 31 31 H 1.08004 * 119.98782 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2300 -3.6447 0.0133 11 7 3.5052 -3.4749 0.0132 12 6 4.1553 -4.7999 0.0352 13 6 2.9794 -5.7274 0.4287 14 1 2.9621 -5.9046 1.5041 15 6 3.0373 -7.0278 -0.3307 16 6 2.7037 -7.0602 -1.6720 17 6 2.7620 -8.2514 -2.3703 18 6 3.1436 -9.4138 -1.7242 19 17 3.2108 -10.9117 -2.5991 20 6 3.4719 -9.3819 -0.3805 21 6 3.4190 -8.1888 0.3153 22 8 1.8470 -4.9349 0.0155 23 1 -0.4851 -0.8400 -0.0004 24 1 0.6205 -2.5547 0.8933 25 1 0.6280 -2.5591 -0.8867 26 1 4.9473 -4.8360 0.7831 27 1 4.5414 -5.0573 -0.9511 28 1 2.4020 -6.1534 -2.1753 29 1 2.5056 -8.2758 -3.4192 30 1 3.7694 -10.2890 0.1245 31 1 3.6757 -8.1637 1.3641 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260669571.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:04 Heat of formation + Delta-G solvation = -20.210724 kcal Electronic energy + Delta-G solvation = -16786.315833 eV Core-core repulsion = 13865.090205 eV Total energy + Delta-G solvation = -2921.225628 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.42275 -40.18096 -37.55009 -35.99503 -34.50832 -33.63672 -32.18878 -31.15043 -28.29015 -25.49712 -24.73471 -23.95857 -22.41239 -21.34603 -18.75632 -18.55628 -17.82485 -17.46912 -16.81569 -16.09500 -15.61907 -15.52373 -14.74394 -14.67273 -14.56119 -14.43882 -14.33023 -13.87029 -13.70204 -13.14315 -12.71227 -12.56961 -12.52895 -12.41640 -12.28869 -11.88358 -11.87315 -11.23269 -10.74536 -10.58970 -10.15481 -10.07637 -9.69546 -8.66218 -6.36498 -0.10094 0.18884 1.03675 1.16693 1.57522 1.66169 1.85348 2.12611 2.53608 2.63100 3.17778 3.20497 3.39770 3.62134 3.77044 3.86736 3.94359 4.23622 4.32773 4.34618 4.54874 4.57226 4.74303 4.84940 4.88151 4.96798 5.06821 5.11112 5.28595 5.39834 5.64074 5.83013 6.29696 6.56714 6.91757 7.40541 8.75135 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.051180 B = 0.003489 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.952827 B = 8023.519254 C = 8168.776790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.032 4.032 3 Si 1.125 2.875 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.600 4.600 8 H 0.068 0.932 9 C 0.072 3.928 10 C 0.319 3.681 11 N -0.555 5.555 12 C -0.003 4.003 13 C 0.085 3.915 14 H 0.117 0.883 15 C -0.089 4.089 16 C -0.098 4.098 17 C -0.113 4.113 18 C -0.037 4.037 19 Cl -0.064 7.064 20 C -0.105 4.105 21 C -0.085 4.085 22 O -0.356 6.356 23 H 0.258 0.742 24 H 0.033 0.967 25 H 0.030 0.970 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.163 0.837 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.270 -21.169 -0.931 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.230 4.230 3 Si 0.947 3.053 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.638 4.638 8 H 0.086 0.914 9 C 0.035 3.965 10 C 0.094 3.906 11 N -0.290 5.290 12 C -0.131 4.131 13 C 0.028 3.972 14 H 0.135 0.865 15 C -0.090 4.090 16 C -0.117 4.117 17 C -0.131 4.131 18 C -0.064 4.064 19 Cl -0.035 7.035 20 C -0.123 4.123 21 C -0.103 4.103 22 O -0.260 6.260 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.137 0.863 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.163 0.837 30 H 0.181 0.819 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.580 -19.203 -1.078 21.060 hybrid contribution -0.501 -2.416 -0.236 2.479 sum 8.079 -21.619 -1.314 23.117 Atomic orbital electron populations 1.70865 1.07769 1.30057 1.48824 1.27338 0.96508 1.06397 0.92740 0.82805 0.74052 0.70885 0.77553 1.20021 1.20368 1.20274 1.22276 0.95745 0.90968 1.54819 0.91356 1.18036 0.92371 0.88575 0.97547 1.25887 0.92942 0.84104 0.87664 1.74917 1.05773 1.23450 1.24885 1.24305 0.98418 0.86574 1.03850 1.23075 0.84495 0.89841 0.99757 0.86502 1.19625 1.01586 0.93604 0.94162 1.20953 0.98572 0.98063 0.94085 1.21156 1.00072 0.90634 1.01288 1.21128 1.03928 0.87608 0.93723 1.98376 1.96905 1.31971 1.76262 1.21316 0.99508 0.99609 0.91904 1.21170 0.97866 0.89834 1.01455 1.86998 1.39734 1.16845 1.82453 0.93215 0.94884 0.95200 0.86328 0.89273 0.86676 0.83660 0.81902 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.76 13.65 21.45 0.29 -56.46 16 2 C -0.03 -1.86 5.46 84.66 0.46 -1.40 16 3 Si 1.13 50.86 29.90 68.60 2.05 52.91 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.60 -34.39 8.95 25.60 0.23 -34.16 16 8 H 0.07 3.99 6.77 -2.91 -0.02 3.97 16 9 C 0.07 3.79 4.91 29.10 0.14 3.93 16 10 C 0.32 14.49 7.68 88.58 0.68 15.17 16 11 N -0.55 -24.35 10.21 -449.41 -4.59 -28.93 16 12 C 0.00 -0.08 7.66 86.80 0.66 0.58 16 13 C 0.09 2.48 3.96 30.48 0.12 2.60 16 14 H 0.12 2.88 8.05 -2.38 -0.02 2.86 16 15 C -0.09 -2.15 5.05 -19.86 -0.10 -2.25 16 16 C -0.10 -2.49 9.20 22.26 0.20 -2.29 16 17 C -0.11 -2.39 9.83 22.29 0.22 -2.17 16 18 C -0.04 -0.70 6.32 22.32 0.14 -0.56 16 19 Cl -0.06 -1.09 28.96 -2.72 -0.08 -1.17 16 20 C -0.11 -1.68 9.83 22.29 0.22 -1.46 16 21 C -0.09 -1.49 9.69 22.27 0.22 -1.27 16 22 O -0.36 -13.84 10.26 -78.54 -0.81 -14.64 16 23 H 0.26 15.62 7.22 -92.71 -0.67 14.95 16 24 H 0.03 1.77 8.00 -2.39 -0.02 1.75 16 25 H 0.03 1.62 8.01 -2.39 -0.02 1.60 16 26 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 27 H 0.09 2.69 7.77 -2.39 -0.02 2.67 16 28 H 0.12 3.33 7.79 -2.91 -0.02 3.31 16 29 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 31 H 0.16 1.88 8.05 -2.91 -0.02 1.86 16 Total: -1.00 -66.27 288.76 1.32 -64.95 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.24 Total: 6.63 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 3.20 Total: -23.28 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -4.29 Total: -85.40 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.81 Total: -14.64 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -66.27 1.32 -64.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260669571.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.744 kcal (2) G-P(sol) polarization free energy of solvation -66.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds