Wall clock time and date at job start Mon Mar 30 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 11 11 N 1.28640 * 122.93807 * 0.02562 * 10 9 7 12 12 C 1.47603 * 108.54721 * 180.38620 * 11 10 9 13 13 C 1.54848 * 101.89477 * 14.95415 * 12 11 10 14 14 H 1.09000 * 111.07545 * 94.73271 * 13 12 11 15 15 C 1.50696 * 111.08169 * 218.73371 * 13 12 11 16 16 C 1.38246 * 119.98396 * 84.72088 * 15 13 12 17 17 C 1.38217 * 120.00923 * 179.72834 * 16 15 13 18 18 C 1.38351 * 119.98748 * 0.55090 * 17 16 15 19 19 Cl 1.73600 * 120.01279 * 179.74321 * 18 17 16 20 20 C 1.38356 * 119.97497 * 359.72848 * 18 17 16 21 21 C 1.38219 * 119.98371 * 359.97438 * 20 18 17 22 22 O 1.34597 * 122.93761 * 179.72863 * 10 9 7 23 23 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 25 25 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 26 26 H 1.08995 * 110.94060 * 133.10526 * 12 11 10 27 27 H 1.08996 * 110.94510 * 256.80550 * 12 11 10 28 28 H 1.07999 * 119.99566 * 0.02562 * 16 15 13 29 29 H 1.08002 * 120.00686 * 180.27653 * 17 16 15 30 30 H 1.07994 * 120.01013 * 180.02562 * 20 18 17 31 31 H 1.08002 * 119.99281 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2305 -3.6445 0.0182 11 7 3.5057 -3.4745 0.0178 12 6 4.1559 -4.7996 0.0150 13 6 2.9822 -5.7303 -0.3770 14 1 2.9705 -5.9152 -1.4512 15 6 3.0369 -7.0251 0.3920 16 6 2.4830 -7.1016 1.6564 17 6 2.5280 -8.2905 2.3600 18 6 3.1374 -9.4008 1.8033 19 17 3.2001 -10.8925 2.6892 20 6 3.6967 -9.3220 0.5403 21 6 3.6457 -8.1343 -0.1648 22 8 1.8476 -4.9348 0.0302 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6248 -2.5524 0.9029 25 1 0.6241 -2.5613 -0.8770 26 1 4.9516 -4.8414 -0.7287 27 1 4.5367 -5.0488 1.0054 28 1 2.0109 -6.2337 2.0925 29 1 2.0913 -8.3515 3.3459 30 1 4.1722 -10.1885 0.1051 31 1 4.0825 -8.0725 -1.1506 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260669572.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:06 Heat of formation + Delta-G solvation = -0.142374 kcal Electronic energy + Delta-G solvation = -16785.737491 eV Core-core repulsion = 13865.382092 eV Total energy + Delta-G solvation = -2920.355399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.01202 -39.22000 -36.73271 -34.02518 -32.95930 -32.32538 -31.32137 -29.54421 -26.78543 -23.60160 -23.35222 -23.05544 -21.31246 -19.69191 -17.60214 -16.74707 -16.54167 -16.08582 -15.48272 -15.10175 -14.48654 -13.79758 -13.75096 -13.68673 -13.23469 -12.96193 -12.51182 -12.42647 -12.07569 -11.89381 -11.75554 -11.36663 -11.17193 -11.05443 -10.64449 -10.57178 -10.05339 -9.66092 -9.30478 -8.81940 -8.66339 -8.58008 -8.32860 -6.39681 -4.09744 0.81198 1.03384 1.85269 2.82866 3.28693 3.47604 3.49853 3.64970 3.69870 4.47194 4.51681 4.56766 4.59720 4.65993 4.98081 5.07467 5.19130 5.29393 5.37039 5.40318 5.62471 5.69485 5.81105 5.91980 5.98080 6.15826 6.42885 6.51227 6.81546 7.01350 7.02537 7.91579 8.49787 8.56375 8.86661 9.59502 11.00138 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.051099 B = 0.003499 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.829030 B = 8001.034797 C = 8190.791583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.076 2.924 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.591 4.591 8 H 0.076 0.924 9 C 0.072 3.928 10 C 0.326 3.674 11 N -0.527 5.527 12 C -0.002 4.002 13 C 0.083 3.917 14 H 0.098 0.902 15 C -0.073 4.073 16 C -0.082 4.082 17 C -0.109 4.109 18 C -0.035 4.035 19 Cl -0.074 7.074 20 C -0.110 4.110 21 C -0.097 4.097 22 O -0.347 6.347 23 H 0.267 0.733 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -19.503 1.691 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.188 4.188 3 Si 0.904 3.096 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.629 4.629 8 H 0.094 0.906 9 C 0.035 3.965 10 C 0.102 3.898 11 N -0.262 5.262 12 C -0.132 4.132 13 C 0.024 3.976 14 H 0.116 0.884 15 C -0.074 4.074 16 C -0.100 4.100 17 C -0.127 4.127 18 C -0.062 4.062 19 Cl -0.046 7.046 20 C -0.129 4.129 21 C -0.115 4.115 22 O -0.252 6.252 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.002 -17.488 1.833 18.927 hybrid contribution -0.032 -2.759 0.031 2.759 sum 6.971 -20.247 1.864 21.494 Atomic orbital electron populations 1.70823 1.06905 1.30437 1.46886 1.25906 0.96400 1.02797 0.93669 0.83433 0.74705 0.74766 0.76723 1.20905 1.21325 1.21343 1.21983 0.95933 0.89613 1.55405 0.90554 1.18301 0.91965 0.87661 0.98574 1.26618 0.93342 0.83584 0.86264 1.75030 1.05662 1.19614 1.25848 1.24164 0.97729 0.88738 1.02554 1.22861 0.86655 0.89727 0.98308 0.88405 1.19706 0.98679 0.94034 0.94951 1.21065 0.97609 0.97751 0.93619 1.21089 0.99452 0.91410 1.00775 1.20968 1.03057 0.88011 0.94147 1.98368 1.97327 1.33294 1.75564 1.20966 1.00274 0.98614 0.93044 1.20852 0.99185 0.91270 1.00197 1.87053 1.37895 1.17753 1.82479 0.92279 0.93952 0.93918 0.88835 0.89946 0.84400 0.84667 0.84688 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.19 13.65 55.43 0.76 -26.43 16 2 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.08 25.26 29.90 -169.99 -5.08 20.18 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.59 -16.61 8.95 -34.44 -0.31 -16.92 16 8 H 0.08 2.19 6.77 -52.49 -0.36 1.84 16 9 C 0.07 1.83 4.91 -29.03 -0.14 1.68 16 10 C 0.33 7.26 7.67 -13.62 -0.10 7.15 16 11 N -0.53 -11.56 10.21 -56.99 -0.58 -12.14 16 12 C 0.00 -0.04 7.68 -2.46 -0.02 -0.05 16 13 C 0.08 1.25 3.98 -26.91 -0.11 1.14 16 14 H 0.10 1.33 8.12 -51.93 -0.42 0.90 16 15 C -0.07 -0.94 5.05 -104.62 -0.53 -1.47 16 16 C -0.08 -1.07 9.39 -39.59 -0.37 -1.44 16 17 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 18 C -0.04 -0.37 6.32 -39.50 -0.25 -0.62 16 19 Cl -0.07 -0.72 28.96 -51.86 -1.50 -2.22 16 20 C -0.11 -1.07 9.83 -39.55 -0.39 -1.46 16 21 C -0.10 -1.00 9.72 -39.59 -0.38 -1.38 16 22 O -0.35 -6.65 9.90 -15.57 -0.15 -6.80 16 23 H 0.27 7.80 7.22 -40.82 -0.29 7.50 16 24 H 0.04 1.09 8.01 -51.92 -0.42 0.67 16 25 H 0.04 1.09 8.00 -51.93 -0.42 0.68 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.08 1.29 7.91 -51.93 -0.41 0.88 16 28 H 0.14 1.93 7.46 -52.49 -0.39 1.54 16 29 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 288.54 15.07 4.35 4.35 Total: -1.00 -30.56 288.54 -8.50 -39.06 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -3.19 Total: -1.35 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -3.09 Total: -14.64 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.18 Total: -38.57 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.15 Total: -6.80 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.56 -8.50 -39.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260669572.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.917 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds