Wall clock time and date at job start Mon Mar 30 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 11 11 N 1.28640 * 122.93807 * 0.02562 * 10 9 7 12 12 C 1.47603 * 108.54721 * 180.38620 * 11 10 9 13 13 C 1.54848 * 101.89477 * 14.95415 * 12 11 10 14 14 H 1.09000 * 111.07545 * 94.73271 * 13 12 11 15 15 C 1.50696 * 111.08169 * 218.73371 * 13 12 11 16 16 C 1.38246 * 119.98396 * 84.72088 * 15 13 12 17 17 C 1.38217 * 120.00923 * 179.72834 * 16 15 13 18 18 C 1.38351 * 119.98748 * 0.55090 * 17 16 15 19 19 Cl 1.73600 * 120.01279 * 179.74321 * 18 17 16 20 20 C 1.38356 * 119.97497 * 359.72848 * 18 17 16 21 21 C 1.38219 * 119.98371 * 359.97438 * 20 18 17 22 22 O 1.34597 * 122.93761 * 179.72863 * 10 9 7 23 23 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 25 25 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 26 26 H 1.08995 * 110.94060 * 133.10526 * 12 11 10 27 27 H 1.08996 * 110.94510 * 256.80550 * 12 11 10 28 28 H 1.07999 * 119.99566 * 0.02562 * 16 15 13 29 29 H 1.08002 * 120.00686 * 180.27653 * 17 16 15 30 30 H 1.07994 * 120.01013 * 180.02562 * 20 18 17 31 31 H 1.08002 * 119.99281 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2305 -3.6445 0.0182 11 7 3.5057 -3.4745 0.0178 12 6 4.1559 -4.7996 0.0150 13 6 2.9822 -5.7303 -0.3770 14 1 2.9705 -5.9152 -1.4512 15 6 3.0369 -7.0251 0.3920 16 6 2.4830 -7.1016 1.6564 17 6 2.5280 -8.2905 2.3600 18 6 3.1374 -9.4008 1.8033 19 17 3.2001 -10.8925 2.6892 20 6 3.6967 -9.3220 0.5403 21 6 3.6457 -8.1343 -0.1648 22 8 1.8476 -4.9348 0.0302 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6248 -2.5524 0.9029 25 1 0.6241 -2.5613 -0.8770 26 1 4.9516 -4.8414 -0.7287 27 1 4.5367 -5.0488 1.0054 28 1 2.0109 -6.2337 2.0925 29 1 2.0913 -8.3515 3.3459 30 1 4.1722 -10.1885 0.1051 31 1 4.0825 -8.0725 -1.1506 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260669572.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:05 Heat of formation + Delta-G solvation = -19.989175 kcal Electronic energy + Delta-G solvation = -16786.598113 eV Core-core repulsion = 13865.382092 eV Total energy + Delta-G solvation = -2921.216021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.41395 -40.17408 -37.54525 -35.99397 -34.51401 -33.63552 -32.16792 -31.15395 -28.29191 -25.50142 -24.70017 -23.96982 -22.40489 -21.32285 -18.75979 -18.56275 -17.82314 -17.45437 -16.80923 -16.11744 -15.60917 -15.54499 -14.75627 -14.63003 -14.57273 -14.44221 -14.33041 -13.85689 -13.69419 -13.15487 -12.70421 -12.55305 -12.53911 -12.42214 -12.28189 -11.87843 -11.86535 -11.23684 -10.74964 -10.58779 -10.14793 -10.08473 -9.67235 -8.66136 -6.36559 -0.08139 0.19419 1.04288 1.16223 1.58011 1.66025 1.86337 2.13079 2.50900 2.62378 3.17865 3.20699 3.39155 3.65357 3.77883 3.86894 3.95456 4.24427 4.33139 4.33679 4.55822 4.57241 4.73986 4.84433 4.89053 4.96740 5.07389 5.11964 5.28446 5.41255 5.64865 5.83138 6.28865 6.56197 6.91363 7.40596 8.75176 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.051099 B = 0.003499 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.829030 B = 8001.034797 C = 8190.791583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.032 4.032 3 Si 1.121 2.879 4 H -0.282 1.282 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.602 4.602 8 H 0.069 0.931 9 C 0.072 3.928 10 C 0.319 3.681 11 N -0.555 5.555 12 C -0.001 4.001 13 C 0.085 3.915 14 H 0.118 0.882 15 C -0.089 4.089 16 C -0.100 4.100 17 C -0.113 4.113 18 C -0.039 4.039 19 Cl -0.065 7.065 20 C -0.104 4.104 21 C -0.087 4.087 22 O -0.356 6.356 23 H 0.258 0.742 24 H 0.030 0.970 25 H 0.033 0.967 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.145 0.855 30 H 0.163 0.837 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.501 -21.083 1.118 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.229 4.229 3 Si 0.942 3.058 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.639 4.639 8 H 0.087 0.913 9 C 0.035 3.965 10 C 0.094 3.906 11 N -0.290 5.290 12 C -0.130 4.130 13 C 0.028 3.972 14 H 0.136 0.864 15 C -0.089 4.089 16 C -0.119 4.119 17 C -0.131 4.131 18 C -0.065 4.065 19 Cl -0.036 7.036 20 C -0.123 4.123 21 C -0.105 4.105 22 O -0.260 6.260 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.138 0.862 27 H 0.107 0.893 28 H 0.135 0.865 29 H 0.163 0.837 30 H 0.181 0.819 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.807 -19.114 1.261 21.083 hybrid contribution -0.549 -2.440 0.239 2.513 sum 8.259 -21.554 1.500 23.131 Atomic orbital electron populations 1.70928 1.07791 1.29992 1.48740 1.27338 0.96494 1.06395 0.92723 0.82865 0.73986 0.71020 0.77894 1.20747 1.19829 1.19601 1.22233 0.95768 0.91005 1.54937 0.91311 1.18028 0.92367 0.88575 0.97533 1.25870 0.92956 0.84116 0.87652 1.74910 1.05765 1.23515 1.24817 1.24287 0.98407 0.86487 1.03860 1.23093 0.84424 0.89853 0.99791 0.86425 1.19634 1.00500 0.93889 0.94884 1.20974 0.98724 0.97869 0.94330 1.21162 0.99640 0.91133 1.01199 1.21128 1.02629 0.88106 0.94671 1.98375 1.97243 1.32489 1.75464 1.21309 0.99276 0.99274 0.92397 1.21125 0.97900 0.90222 1.01204 1.87019 1.39740 1.16749 1.82526 0.93276 0.95221 0.94887 0.86182 0.89334 0.86548 0.83728 0.81897 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.82 13.65 21.45 0.29 -56.53 16 2 C -0.03 -1.84 5.46 84.65 0.46 -1.38 16 3 Si 1.12 50.63 29.90 68.60 2.05 52.68 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.60 -34.44 8.95 25.60 0.23 -34.21 16 8 H 0.07 3.99 6.77 -2.91 -0.02 3.97 16 9 C 0.07 3.80 4.91 29.10 0.14 3.94 16 10 C 0.32 14.46 7.67 88.58 0.68 15.14 16 11 N -0.55 -24.24 10.21 -449.43 -4.59 -28.83 16 12 C 0.00 -0.05 7.68 86.80 0.67 0.62 16 13 C 0.09 2.47 3.98 30.48 0.12 2.59 16 14 H 0.12 2.90 8.12 -2.39 -0.02 2.88 16 15 C -0.09 -2.13 5.05 -19.86 -0.10 -2.23 16 16 C -0.10 -2.57 9.39 22.27 0.21 -2.36 16 17 C -0.11 -2.41 9.83 22.29 0.22 -2.19 16 18 C -0.04 -0.73 6.32 22.32 0.14 -0.59 16 19 Cl -0.06 -1.10 28.96 -2.72 -0.08 -1.18 16 20 C -0.10 -1.66 9.83 22.29 0.22 -1.45 16 21 C -0.09 -1.49 9.72 22.27 0.22 -1.28 16 22 O -0.36 -13.77 9.90 -78.62 -0.78 -14.55 16 23 H 0.26 15.60 7.22 -92.70 -0.67 14.93 16 24 H 0.03 1.61 8.01 -2.38 -0.02 1.59 16 25 H 0.03 1.77 8.00 -2.39 -0.02 1.75 16 26 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.09 2.66 7.91 -2.39 -0.02 2.64 16 28 H 0.12 3.42 7.46 -2.91 -0.02 3.40 16 29 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -66.32 288.54 1.35 -64.97 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.24 Total: 6.83 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 3.21 Total: -23.40 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -4.29 Total: -85.35 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.78 Total: -14.55 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.05 Total: 52.68 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -66.32 1.35 -64.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260669572.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.977 kcal (2) G-P(sol) polarization free energy of solvation -66.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds