Wall clock time and date at job start Mon Mar 30 2020 06:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.92249 * 305.70480 * 10 9 7 12 12 C 1.54818 * 111.04822 * 181.71034 * 10 9 7 13 13 N 1.47664 * 101.96951 * 218.52571 * 12 10 9 14 14 C 1.29634 * 108.46001 * 15.00261 * 13 12 10 15 15 C 1.47995 * 123.08272 * 180.40327 * 14 13 12 16 16 C 1.39517 * 120.13401 * 0.03132 * 15 14 13 17 17 C 1.37958 * 119.89315 * 179.97438 * 16 15 14 18 18 C 1.38349 * 120.15197 * 359.97438 * 17 16 15 19 19 C 1.38435 * 120.25863 * 0.02562 * 18 17 16 20 20 Cl 1.73606 * 119.94149 * 179.97438 * 19 18 17 21 21 C 1.38124 * 120.11567 * 359.70357 * 19 18 17 22 22 O 1.34936 * 113.82993 * 0.43206 * 14 13 12 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.09001 * 110.92364 * 336.67314 * 12 10 9 27 27 H 1.08996 * 110.92626 * 100.32747 * 12 10 9 28 28 H 1.08007 * 120.05452 * 359.95395 * 16 15 14 29 29 H 1.07997 * 119.93034 * 179.97438 * 17 16 15 30 30 H 1.08000 * 119.87156 * 180.02562 * 18 17 16 31 31 H 1.07992 * 120.08346 * 180.27542 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 1 2.9459 -3.5734 -0.8274 12 6 1.5085 -5.0233 -0.0346 13 7 2.3403 -5.8465 0.8659 14 6 3.1122 -5.0582 1.5466 15 6 4.0892 -5.5480 2.5445 16 6 4.2135 -6.9158 2.7901 17 6 5.1263 -7.3669 3.7210 18 6 5.9185 -6.4664 4.4106 19 6 5.8004 -5.1080 4.1718 20 17 6.7982 -3.9852 5.0423 21 6 4.8940 -4.6446 3.2381 22 8 2.9427 -3.7501 1.2622 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 0.4939 -4.9275 0.3520 27 1 1.5019 -5.4348 -1.0439 28 1 3.5959 -7.6202 2.2527 29 1 5.2227 -8.4255 3.9120 30 1 6.6318 -6.8246 5.1381 31 1 4.8055 -3.5851 3.0490 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260682879.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:34 Heat of formation + Delta-G solvation = -1.187190 kcal Electronic energy + Delta-G solvation = -16858.937421 eV Core-core repulsion = 13938.536715 eV Total energy + Delta-G solvation = -2920.400706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.69829 -39.12072 -36.56262 -33.63972 -33.12156 -32.08766 -30.89739 -30.18427 -26.74948 -23.88491 -23.17095 -22.45477 -20.88827 -19.91386 -17.51886 -16.71161 -16.07064 -15.72031 -15.43285 -15.03862 -14.61274 -14.11811 -13.86224 -13.51241 -13.27674 -12.62140 -12.41413 -11.97815 -11.76085 -11.65938 -11.59475 -11.29941 -11.05991 -11.00670 -10.71069 -10.58197 -10.17668 -9.65351 -9.26740 -9.14353 -8.93573 -8.45891 -8.35830 -6.08456 -4.11093 0.65634 1.05650 1.98202 2.56185 3.31160 3.35265 3.38518 3.50832 3.65687 4.34149 4.40705 4.70300 4.82262 5.05655 5.17849 5.25335 5.30303 5.33931 5.58216 5.65066 5.78730 5.89161 6.07068 6.18381 6.21623 6.29917 6.45344 6.56833 6.80736 7.37707 7.50901 7.87023 8.06355 8.25508 8.92181 9.53001 11.02797 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.005230 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.647275 B = 5352.233482 C = 6714.444533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.063 3.937 11 H 0.081 0.919 12 C -0.007 4.007 13 N -0.545 5.545 14 C 0.331 3.669 15 C -0.020 4.020 16 C -0.066 4.066 17 C -0.117 4.117 18 C -0.095 4.095 19 C -0.042 4.042 20 Cl -0.067 7.067 21 C -0.069 4.069 22 O -0.321 6.321 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.650 -13.576 7.356 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.006 3.994 11 H 0.099 0.901 12 C -0.137 4.137 13 N -0.281 5.281 14 C 0.108 3.892 15 C -0.022 4.022 16 C -0.085 4.085 17 C -0.135 4.135 18 C -0.115 4.115 19 C -0.068 4.068 20 Cl -0.038 7.038 21 C -0.090 4.090 22 O -0.223 6.223 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.162 0.838 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.338 -13.971 7.334 18.865 hybrid contribution 0.370 1.881 -0.151 1.923 sum 10.708 -12.091 7.183 17.676 Atomic orbital electron populations 1.69937 1.06076 1.27022 1.50412 1.24992 0.94869 0.99371 0.95034 0.86589 0.79556 0.82749 0.78759 1.20155 1.21216 1.20092 1.21059 0.93133 0.90407 1.51165 0.92355 1.19271 0.92700 0.90263 0.98671 1.24565 0.94504 0.97602 0.82697 0.90073 1.24166 0.99275 0.91568 0.98650 1.74887 1.09453 1.31081 1.12701 1.23255 0.91502 0.82128 0.92299 1.17714 0.95261 0.93226 0.95980 1.21378 0.96859 0.94177 0.96114 1.21047 0.95991 0.99974 0.96459 1.21210 0.99577 0.90914 0.99792 1.20750 0.97142 0.90869 0.98086 1.98380 1.68310 1.61798 1.75331 1.21325 0.92881 1.01514 0.93243 1.87150 1.73160 1.22322 1.39714 0.92752 0.95297 0.94073 0.88989 0.88765 0.83797 0.84399 0.84679 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.54 9.02 -34.44 -0.31 -14.85 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.71 4.69 -27.88 -0.13 0.58 16 10 C 0.06 1.33 3.65 -25.77 -0.09 1.24 16 11 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 12 C -0.01 -0.13 7.69 -2.45 -0.02 -0.15 16 13 N -0.54 -9.85 11.15 -57.61 -0.64 -10.49 16 14 C 0.33 6.05 7.59 -14.48 -0.11 5.94 16 15 C -0.02 -0.30 5.87 -104.96 -0.62 -0.92 16 16 C -0.07 -0.78 9.63 -39.21 -0.38 -1.16 16 17 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 18 C -0.10 -0.93 9.82 -39.47 -0.39 -1.31 16 19 C -0.04 -0.50 6.31 -39.55 -0.25 -0.75 16 20 Cl -0.07 -0.77 28.95 -51.86 -1.50 -2.27 16 21 C -0.07 -0.98 9.45 -39.17 -0.37 -1.35 16 22 O -0.32 -6.87 10.31 -16.53 -0.17 -7.04 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.09 1.68 7.91 -51.93 -0.41 1.27 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.14 1.64 7.71 -52.48 -0.40 1.23 16 29 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.15 2.26 7.77 -52.49 -0.41 1.86 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -30.35 291.91 -8.66 -39.01 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -3.30 Total: -1.83 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.16 Total: -12.65 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.09 Total: -36.20 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.17 Total: -7.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.35 -8.66 -39.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260682879.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.824 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds