Wall clock time and date at job start Mon Mar 30 2020 06:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00077 * 2 1 4 4 H 1.48497 * 109.46875 * 269.99837 * 3 2 1 5 5 H 1.48500 * 109.47167 * 29.99444 * 3 2 1 6 6 H 1.48498 * 109.47378 * 149.99630 * 3 2 1 7 7 C 1.37882 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47073 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.92169 * 51.00244 * 10 9 7 12 12 C 1.54814 * 111.04986 * 174.99944 * 10 9 7 13 13 N 1.47582 * 102.00719 * 141.53664 * 12 10 9 14 14 C 1.29636 * 108.44381 * 344.94438 * 13 12 10 15 15 C 1.47999 * 123.08570 * 179.60402 * 14 13 12 16 16 C 1.39527 * 120.12792 * 0.02562 * 15 14 13 17 17 C 1.37958 * 119.88450 * 180.25998 * 16 15 14 18 18 C 1.38342 * 120.15562 * 359.46371 * 17 16 15 19 19 C 1.38440 * 120.26078 * 0.51568 * 18 17 16 20 20 Cl 1.73601 * 119.94211 * 179.74394 * 19 18 17 21 21 C 1.38115 * 120.11029 * 359.76852 * 19 18 17 22 22 O 1.34931 * 113.83017 * 359.87310 * 14 13 12 23 23 H 0.97003 * 120.00116 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47337 * 59.99588 * 9 7 2 25 25 H 1.09004 * 109.47067 * 299.99597 * 9 7 2 26 26 H 1.09005 * 110.92439 * 23.35752 * 12 10 9 27 27 H 1.08999 * 110.92518 * 259.72144 * 12 10 9 28 28 H 1.08002 * 120.05410 * 359.97438 * 16 15 14 29 29 H 1.08002 * 119.92102 * 179.72541 * 17 16 15 30 30 H 1.08003 * 119.87259 * 180.26042 * 18 17 16 31 31 H 1.08003 * 120.07976 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 1 2.9846 -3.5412 0.7936 12 6 1.5126 -5.0200 0.1278 13 7 2.3014 -5.8795 -0.7761 14 6 3.0393 -5.1201 -1.5239 15 6 3.9687 -5.6507 -2.5462 16 6 4.0820 -7.0274 -2.7425 17 6 4.9539 -7.5168 -3.6931 18 6 5.7074 -6.6454 -4.4591 19 6 5.5996 -5.2783 -4.2699 20 17 6.5540 -4.1926 -5.2313 21 6 4.7345 -4.7767 -3.3173 22 8 2.8865 -3.8017 -1.2808 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 0.4808 -4.9388 -0.2142 27 1 1.5535 -5.3909 1.1519 28 1 3.4915 -7.7090 -2.1481 29 1 5.0453 -8.5825 -3.8424 30 1 6.3855 -7.0334 -5.2049 31 1 4.6505 -3.7100 -3.1704 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260682883.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:35 Heat of formation + Delta-G solvation = -21.802833 kcal Electronic energy + Delta-G solvation = -16847.332074 eV Core-core repulsion = 13926.037406 eV Total energy + Delta-G solvation = -2921.294667 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.21231 -40.10962 -37.48273 -35.61103 -34.66583 -33.55786 -31.95134 -31.62033 -28.48463 -25.53229 -24.40676 -23.59742 -22.55063 -21.28096 -18.81051 -18.60038 -17.50563 -17.08481 -16.73289 -16.43138 -15.99011 -15.66218 -14.76217 -14.63161 -14.55729 -14.35557 -14.13183 -13.69590 -13.25358 -13.05315 -12.76756 -12.59847 -12.57619 -12.43008 -12.42209 -11.93925 -11.85124 -11.59375 -11.01740 -10.65733 -10.55832 -9.90295 -9.60152 -8.27013 -6.37725 -0.36781 0.13894 1.06725 1.31367 1.37626 1.38882 1.49895 2.15876 2.36767 2.64478 2.96056 3.08391 3.63768 3.82493 3.96379 4.00709 4.10272 4.23000 4.30112 4.40331 4.55165 4.63167 4.76186 4.84566 5.09924 5.19682 5.26437 5.29434 5.39515 5.45803 5.67553 5.69135 6.08983 6.58535 6.73200 7.30873 8.84652 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.005152 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.771733 B = 5433.908839 C = 6767.847117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.035 3.965 10 C 0.065 3.935 11 H 0.086 0.914 12 C -0.001 4.001 13 N -0.545 5.545 14 C 0.327 3.673 15 C -0.049 4.049 16 C -0.063 4.063 17 C -0.098 4.098 18 C -0.079 4.079 19 C -0.049 4.049 20 Cl -0.066 7.066 21 C -0.086 4.086 22 O -0.347 6.347 23 H 0.266 0.734 24 H -0.002 1.002 25 H 0.032 0.968 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.150 0.850 29 H 0.182 0.818 30 H 0.170 0.830 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.057 -15.518 -8.302 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.074 0.926 9 C -0.002 4.002 10 C 0.008 3.992 11 H 0.104 0.896 12 C -0.130 4.130 13 N -0.281 5.281 14 C 0.105 3.895 15 C -0.051 4.051 16 C -0.083 4.083 17 C -0.116 4.116 18 C -0.098 4.098 19 C -0.075 4.075 20 Cl -0.037 7.037 21 C -0.107 4.107 22 O -0.251 6.251 23 H 0.075 0.925 24 H 0.017 0.983 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.168 0.832 29 H 0.199 0.801 30 H 0.187 0.813 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.758 -15.934 -8.241 21.449 hybrid contribution -0.147 2.324 0.291 2.347 sum 11.611 -13.610 -7.950 19.577 Atomic orbital electron populations 1.70057 1.07610 1.28047 1.51172 1.25885 0.95767 1.03146 0.94436 0.85460 0.78756 0.78505 0.78446 1.20087 1.20217 1.18808 1.21461 0.93272 0.91879 1.51175 0.92613 1.19063 0.93080 0.91437 0.96651 1.24296 0.95105 0.97598 0.82187 0.89630 1.24134 0.99057 0.89452 1.00354 1.74857 1.11081 1.30570 1.11621 1.23911 0.91837 0.80734 0.93034 1.17805 0.96888 0.94587 0.95800 1.21558 0.97194 0.92323 0.97178 1.21504 0.94200 1.02105 0.93762 1.21658 0.98982 0.89704 0.99494 1.20859 0.97689 0.92283 0.96683 1.98380 1.70515 1.64585 1.70235 1.21169 0.94659 1.00553 0.94295 1.87056 1.75544 1.24061 1.38412 0.92499 0.98331 0.95029 0.89474 0.86190 0.83232 0.80054 0.81274 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.08 9.07 25.60 0.23 -30.85 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.84 4.69 29.85 0.14 1.98 16 10 C 0.06 2.83 3.62 31.21 0.11 2.94 16 11 H 0.09 3.62 8.14 -2.38 -0.02 3.60 16 12 C 0.00 -0.03 7.68 86.79 0.67 0.64 16 13 N -0.55 -19.60 11.15 -450.92 -5.03 -24.63 16 14 C 0.33 12.13 7.60 87.61 0.67 12.80 16 15 C -0.05 -1.45 5.87 -20.08 -0.12 -1.57 16 16 C -0.06 -1.35 9.64 22.51 0.22 -1.14 16 17 C -0.10 -1.40 10.03 22.23 0.22 -1.18 16 18 C -0.08 -1.23 9.82 22.34 0.22 -1.01 16 19 C -0.05 -1.08 6.31 22.29 0.14 -0.94 16 20 Cl -0.07 -1.43 28.95 -2.72 -0.08 -1.51 16 21 C -0.09 -2.45 9.45 22.53 0.21 -2.24 16 22 O -0.35 -15.44 10.36 -82.00 -0.85 -16.29 16 23 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 24 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.03 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.09 3.26 7.91 -2.38 -0.02 3.24 16 27 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 28 H 0.15 3.03 7.71 -2.91 -0.02 3.01 16 29 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 30 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.12 4.05 7.77 -2.91 -0.02 4.02 16 Total: -1.00 -67.24 291.97 0.67 -66.57 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 1.14 Total: 4.65 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 3.17 Total: -19.74 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -4.74 Total: -80.39 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.85 Total: -16.29 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -67.24 0.67 -66.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260682883.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.766 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds