Wall clock time and date at job start Mon Mar 30 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99805 * 2 1 4 4 H 1.48504 * 109.46932 * 239.99935 * 3 2 1 5 5 H 1.48491 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47100 * 120.00173 * 3 2 1 7 7 C 1.37879 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00040 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.47080 * 179.97438 * 9 7 2 11 11 N 1.28704 * 122.92833 * 359.95169 * 10 9 7 12 12 C 1.47600 * 108.51189 * 179.56660 * 11 10 9 13 13 H 1.08988 * 110.94680 * 103.25740 * 12 11 10 14 14 C 1.50707 * 110.94074 * 226.92592 * 12 11 10 15 15 C 1.38229 * 120.00890 * 20.59368 * 14 12 11 16 16 C 1.38229 * 120.01172 * 179.72211 * 15 14 12 17 17 C 1.38259 * 120.02466 * 0.51263 * 16 15 14 18 18 C 1.38202 * 120.01288 * 359.48305 * 17 16 15 19 19 C 1.38333 * 120.00375 * 200.57015 * 14 12 11 20 20 Cl 1.73606 * 120.01328 * 0.04360 * 19 14 12 21 21 C 1.54853 * 101.92622 * 345.08666 * 12 11 10 22 22 O 1.34599 * 122.93824 * 179.97438 * 10 9 7 23 23 H 0.96998 * 120.00301 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47002 * 60.00071 * 9 7 2 25 25 H 1.08996 * 109.47189 * 299.99972 * 9 7 2 26 26 H 1.08000 * 119.99804 * 359.97438 * 15 14 12 27 27 H 1.07997 * 119.98404 * 180.27362 * 16 15 14 28 28 H 1.08002 * 119.99550 * 179.76936 * 17 16 15 29 29 H 1.07999 * 120.00653 * 180.27788 * 18 17 16 30 30 H 1.09003 * 111.07331 * 141.20311 * 21 12 11 31 31 H 1.08991 * 111.08376 * 265.20733 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0015 11 7 3.5061 -3.4744 -0.0005 12 6 4.1558 -4.7997 0.0105 13 1 4.5365 -5.0552 -0.9783 14 6 5.2564 -4.8515 1.0386 15 6 5.2704 -3.9457 2.0827 16 6 6.2767 -3.9968 3.0290 17 6 7.2756 -4.9471 2.9259 18 6 7.2627 -5.8533 1.8826 19 6 6.2527 -5.8059 0.9380 20 17 6.2361 -6.9436 -0.3733 21 6 2.9822 -5.7281 0.4088 22 8 1.8474 -4.9350 0.0028 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 4.4927 -3.2005 2.1614 27 1 6.2847 -3.2917 3.8470 28 1 8.0637 -4.9843 3.6635 29 1 8.0406 -6.5985 1.8047 30 1 3.0211 -6.6676 -0.1426 31 1 2.9714 -5.9072 1.4838 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260692115.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:28 Heat of formation + Delta-G solvation = 5.243633 kcal Electronic energy + Delta-G solvation = -17215.081675 eV Core-core repulsion = 14294.959830 eV Total energy + Delta-G solvation = -2920.121845 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.81638 -39.03631 -36.48689 -33.75751 -33.48694 -31.54586 -30.71419 -29.43964 -27.26864 -23.82388 -23.47999 -22.59713 -20.87796 -19.46081 -17.25993 -16.63668 -16.04337 -15.80146 -15.23673 -14.96231 -14.60840 -14.11483 -13.82574 -13.71758 -13.04995 -12.46331 -12.43943 -12.21634 -11.71867 -11.55642 -11.41262 -11.31066 -11.08970 -10.78389 -10.74774 -10.62772 -9.96428 -9.66022 -9.06501 -8.92650 -8.73993 -8.54182 -8.28701 -6.06881 -4.07194 1.11336 1.27423 2.07737 2.92168 3.36244 3.39374 3.43518 3.59938 3.89966 4.47430 4.64042 4.72921 4.80956 5.04260 5.13808 5.22027 5.30635 5.31666 5.42434 5.62611 5.66428 5.86532 5.99923 6.16259 6.35803 6.41862 6.59317 6.82789 7.09411 7.26121 7.31983 7.97226 8.12617 8.63663 9.04467 9.56999 11.05312 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.005514 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.622795 B = 5076.710530 C = 5796.940579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.082 0.918 9 C 0.083 3.917 10 C 0.329 3.671 11 N -0.529 5.529 12 C 0.051 3.949 13 H 0.101 0.899 14 C -0.055 4.055 15 C -0.077 4.077 16 C -0.117 4.117 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.033 4.033 20 Cl -0.075 7.075 21 C 0.029 3.971 22 O -0.352 6.352 23 H 0.263 0.737 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.145 0.855 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.866 -12.500 4.600 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.100 0.900 9 C 0.046 3.954 10 C 0.106 3.894 11 N -0.265 5.265 12 C -0.059 4.059 13 H 0.119 0.881 14 C -0.056 4.056 15 C -0.095 4.095 16 C -0.135 4.135 17 C -0.132 4.132 18 C -0.135 4.135 19 C -0.060 4.060 20 Cl -0.046 7.046 21 C -0.048 4.048 22 O -0.256 6.256 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.162 0.838 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.120 0.880 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.178 -11.993 4.410 17.652 hybrid contribution 0.279 -0.051 -0.142 0.317 sum 12.457 -12.044 4.268 17.845 Atomic orbital electron populations 1.69948 1.06055 1.27139 1.50758 1.24995 0.94871 0.99430 0.95214 0.86470 0.79321 0.82317 0.78801 1.20149 1.21434 1.20168 1.21121 0.94464 0.88555 1.50648 0.90019 1.18238 0.91310 0.85994 0.99884 1.27109 0.93338 0.84190 0.84775 1.75114 1.05411 1.18563 1.27450 1.22482 0.94177 0.91392 0.97857 0.88090 1.19440 0.95039 0.94704 0.96423 1.21266 0.98826 0.97326 0.92082 1.21328 0.94425 0.98549 0.99195 1.21094 0.98992 0.95244 0.97844 1.20933 0.97834 1.00382 0.94363 1.20787 0.98071 0.94699 0.92429 1.98350 1.98372 1.59765 1.48145 1.24443 0.83940 0.95549 1.00880 1.87017 1.38198 1.18140 1.82269 0.92742 0.92850 0.92781 0.83771 0.85307 0.85340 0.85163 0.87957 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.97 8.95 -34.44 -0.31 -14.28 16 8 H 0.08 2.26 6.76 -52.49 -0.36 1.91 16 9 C 0.08 2.10 5.60 -29.03 -0.16 1.93 16 10 C 0.33 7.33 7.68 -13.59 -0.10 7.23 16 11 N -0.53 -11.42 8.61 -51.70 -0.45 -11.87 16 12 C 0.05 0.89 3.46 -67.50 -0.23 0.66 16 13 H 0.10 1.74 7.24 -51.94 -0.38 1.36 16 14 C -0.05 -0.86 5.06 -104.59 -0.53 -1.39 16 15 C -0.08 -1.19 9.37 -39.59 -0.37 -1.56 16 16 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 17 C -0.11 -1.22 10.05 -39.59 -0.40 -1.62 16 18 C -0.12 -1.33 9.83 -39.55 -0.39 -1.72 16 19 C -0.03 -0.44 6.31 -39.50 -0.25 -0.69 16 20 Cl -0.08 -0.93 27.46 -51.86 -1.42 -2.35 16 21 C 0.03 0.47 7.73 38.13 0.29 0.76 16 22 O -0.35 -7.03 11.17 -15.57 -0.17 -7.21 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 25 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 26 H 0.14 2.54 7.23 -52.49 -0.38 2.16 16 27 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.16 7.91 -51.93 -0.41 0.75 16 LS Contribution 286.99 15.07 4.32 4.32 Total: -1.00 -29.13 286.99 -8.14 -37.27 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.19 Total: -0.44 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.95 Total: -11.08 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.29 Total: -37.03 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.17 Total: -7.21 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.42 Total: -2.35 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.13 -8.14 -37.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260692115.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.510 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds