Wall clock time and date at job start Mon Mar 30 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99805 * 2 1 4 4 H 1.48504 * 109.46932 * 239.99935 * 3 2 1 5 5 H 1.48491 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47100 * 120.00173 * 3 2 1 7 7 C 1.37879 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00040 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.47080 * 179.97438 * 9 7 2 11 11 N 1.28704 * 122.92833 * 359.95169 * 10 9 7 12 12 C 1.47600 * 108.51189 * 179.56660 * 11 10 9 13 13 H 1.08988 * 110.94680 * 103.25740 * 12 11 10 14 14 C 1.50707 * 110.94074 * 226.92592 * 12 11 10 15 15 C 1.38229 * 120.00890 * 20.59368 * 14 12 11 16 16 C 1.38229 * 120.01172 * 179.72211 * 15 14 12 17 17 C 1.38259 * 120.02466 * 0.51263 * 16 15 14 18 18 C 1.38202 * 120.01288 * 359.48305 * 17 16 15 19 19 C 1.38333 * 120.00375 * 200.57015 * 14 12 11 20 20 Cl 1.73606 * 120.01328 * 0.04360 * 19 14 12 21 21 C 1.54853 * 101.92622 * 345.08666 * 12 11 10 22 22 O 1.34599 * 122.93824 * 179.97438 * 10 9 7 23 23 H 0.96998 * 120.00301 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47002 * 60.00071 * 9 7 2 25 25 H 1.08996 * 109.47189 * 299.99972 * 9 7 2 26 26 H 1.08000 * 119.99804 * 359.97438 * 15 14 12 27 27 H 1.07997 * 119.98404 * 180.27362 * 16 15 14 28 28 H 1.08002 * 119.99550 * 179.76936 * 17 16 15 29 29 H 1.07999 * 120.00653 * 180.27788 * 18 17 16 30 30 H 1.09003 * 111.07331 * 141.20311 * 21 12 11 31 31 H 1.08991 * 111.08376 * 265.20733 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0015 11 7 3.5061 -3.4744 -0.0005 12 6 4.1558 -4.7997 0.0105 13 1 4.5365 -5.0552 -0.9783 14 6 5.2564 -4.8515 1.0386 15 6 5.2704 -3.9457 2.0827 16 6 6.2767 -3.9968 3.0290 17 6 7.2756 -4.9471 2.9259 18 6 7.2627 -5.8533 1.8826 19 6 6.2527 -5.8059 0.9380 20 17 6.2361 -6.9436 -0.3733 21 6 2.9822 -5.7281 0.4088 22 8 1.8474 -4.9350 0.0028 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 4.4927 -3.2005 2.1614 27 1 6.2847 -3.2917 3.8470 28 1 8.0637 -4.9843 3.6635 29 1 8.0406 -6.5985 1.8047 30 1 3.0211 -6.6676 -0.1426 31 1 2.9714 -5.9072 1.4838 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260692115.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:28 Heat of formation + Delta-G solvation = -13.120575 kcal Electronic energy + Delta-G solvation = -17215.878007 eV Core-core repulsion = 14294.959830 eV Total energy + Delta-G solvation = -2920.918176 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.30834 -40.11204 -37.46480 -35.60467 -35.03784 -33.23338 -31.70611 -30.94058 -28.89861 -25.59776 -24.93811 -23.63182 -22.06706 -21.17029 -18.40109 -18.35066 -17.81082 -17.14291 -16.53999 -16.40654 -16.11793 -15.56678 -14.97268 -14.76200 -14.36598 -14.30739 -14.09594 -13.51130 -13.41825 -12.86240 -12.72115 -12.57560 -12.47735 -12.38540 -12.36501 -11.92239 -11.76566 -11.55552 -10.88975 -10.61784 -10.14267 -9.84385 -9.65351 -8.20467 -6.27553 0.11433 0.26851 1.08062 1.22770 1.44479 1.47239 1.55357 2.30299 2.53362 2.60109 3.15692 3.27411 3.47506 3.72307 3.86600 3.97475 4.10913 4.30864 4.37714 4.44360 4.56497 4.66380 4.85702 4.96226 5.13368 5.20026 5.23894 5.34856 5.47251 5.52112 5.81589 5.83955 6.07068 6.82816 6.98778 7.40342 8.92239 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.005514 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.622795 B = 5076.710530 C = 5796.940579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.522 4.522 8 H 0.075 0.925 9 C 0.088 3.912 10 C 0.320 3.680 11 N -0.544 5.544 12 C 0.052 3.948 13 H 0.102 0.898 14 C -0.076 4.076 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.099 4.099 18 C -0.110 4.110 19 C -0.039 4.039 20 Cl -0.068 7.068 21 C 0.031 3.969 22 O -0.362 6.362 23 H 0.266 0.734 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.111 0.889 27 H 0.148 0.852 28 H 0.169 0.831 29 H 0.160 0.840 30 H 0.133 0.867 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.497 -13.358 5.516 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.560 4.560 8 H 0.093 0.907 9 C 0.051 3.949 10 C 0.095 3.905 11 N -0.280 5.280 12 C -0.058 4.058 13 H 0.120 0.880 14 C -0.077 4.077 15 C -0.122 4.122 16 C -0.134 4.134 17 C -0.117 4.117 18 C -0.128 4.128 19 C -0.066 4.066 20 Cl -0.039 7.039 21 C -0.045 4.045 22 O -0.266 6.266 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.130 0.870 27 H 0.166 0.834 28 H 0.186 0.814 29 H 0.178 0.822 30 H 0.151 0.849 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.816 -12.872 5.328 20.337 hybrid contribution -0.447 0.113 -0.399 0.610 sum 14.369 -12.759 4.929 19.838 Atomic orbital electron populations 1.70053 1.07416 1.28114 1.51454 1.25814 0.95706 1.02809 0.94718 0.85465 0.78171 0.78206 0.78955 1.19840 1.20579 1.19385 1.21328 0.94300 0.89768 1.50628 0.90683 1.17911 0.91567 0.87044 0.98386 1.26412 0.93068 0.84520 0.86467 1.75006 1.05321 1.21835 1.25843 1.22518 0.94985 0.89423 0.98846 0.88025 1.19305 0.95604 0.96390 0.96410 1.21126 0.99673 0.97518 0.93868 1.21567 0.93794 0.99338 0.98743 1.21536 0.98769 0.93475 0.97937 1.21352 0.97418 1.00672 0.93371 1.20874 0.98035 0.94447 0.93246 1.98352 1.98357 1.59277 1.47944 1.24704 0.82041 0.95748 1.02046 1.86972 1.39885 1.17377 1.82393 0.92504 0.94649 0.94267 0.87047 0.83432 0.81382 0.82202 0.84931 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.52 -29.54 8.95 25.60 0.23 -29.31 16 8 H 0.08 4.28 6.76 -2.91 -0.02 4.26 16 9 C 0.09 4.69 5.60 29.10 0.16 4.85 16 10 C 0.32 14.78 7.68 88.57 0.68 15.46 16 11 N -0.54 -24.14 8.61 -432.69 -3.73 -27.87 16 12 C 0.05 1.81 3.46 44.67 0.15 1.96 16 13 H 0.10 3.47 7.24 -2.39 -0.02 3.46 16 14 C -0.08 -2.32 5.06 -19.84 -0.10 -2.42 16 15 C -0.10 -3.19 9.37 22.27 0.21 -2.99 16 16 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 17 C -0.10 -1.73 10.05 22.27 0.22 -1.51 16 18 C -0.11 -2.09 9.83 22.29 0.22 -1.87 16 19 C -0.04 -0.96 6.31 22.32 0.14 -0.82 16 20 Cl -0.07 -1.54 27.46 -2.72 -0.07 -1.61 16 21 C 0.03 0.97 7.73 72.61 0.56 1.53 16 22 O -0.36 -14.74 11.17 -78.64 -0.88 -15.62 16 23 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 24 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 25 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.11 4.13 7.23 -2.91 -0.02 4.11 16 27 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 28 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 31 H 0.09 2.57 7.91 -2.39 -0.02 2.56 16 Total: -1.00 -64.09 286.99 1.94 -62.15 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.14 Total: 7.44 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 3.17 Total: -16.63 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -3.44 Total: -82.27 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.88 Total: -15.62 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.07 Total: -1.61 kcal Total: -64.09 1.94 -62.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260692115.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.031 kcal (2) G-P(sol) polarization free energy of solvation -64.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds