Wall clock time and date at job start Mon Mar 30 2020 06:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99779 * 2 1 4 4 H 1.48500 * 109.46997 * 240.00256 * 3 2 1 5 5 H 1.48495 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47120 * 120.00346 * 3 2 1 7 7 C 1.37878 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47395 * 179.97438 * 9 7 2 11 11 N 1.28642 * 122.93580 * 359.97438 * 10 9 7 12 12 C 1.47600 * 108.54688 * 180.40967 * 11 10 9 13 13 H 1.09007 * 110.97251 * 256.78619 * 12 11 10 14 14 C 1.50702 * 110.95030 * 133.10123 * 12 11 10 15 15 C 1.38237 * 120.00143 * 347.51281 * 14 12 11 16 16 C 1.38221 * 120.01233 * 179.97438 * 15 14 12 17 17 C 1.38263 * 120.02714 * 359.97438 * 16 15 14 18 18 C 1.38195 * 120.01003 * 359.97438 * 17 16 15 19 19 C 1.38326 * 120.01026 * 167.48881 * 14 12 11 20 20 Cl 1.73600 * 120.01508 * 0.02562 * 19 14 12 21 21 C 1.54850 * 101.89804 * 14.94709 * 12 11 10 22 22 O 1.34595 * 122.94222 * 179.97438 * 10 9 7 23 23 H 0.96997 * 120.00010 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47480 * 59.99984 * 9 7 2 25 25 H 1.09003 * 109.47222 * 299.99747 * 9 7 2 26 26 H 1.08003 * 119.99824 * 359.95431 * 15 14 12 27 27 H 1.08002 * 119.98422 * 180.02562 * 16 15 14 28 28 H 1.07999 * 119.99487 * 180.27557 * 17 16 15 29 29 H 1.08002 * 120.00463 * 179.97438 * 18 17 16 30 30 H 1.08998 * 111.07314 * 94.73688 * 21 12 11 31 31 H 1.08994 * 111.07962 * 218.77655 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0018 11 7 3.5056 -3.4745 -0.0032 12 6 4.1558 -4.7995 -0.0141 13 1 4.5386 -5.0545 0.9742 14 6 5.2544 -4.8522 -1.0444 15 6 5.3631 -3.8504 -1.9907 16 6 6.3709 -3.8981 -2.9355 17 6 7.2712 -4.9475 -2.9343 18 6 7.1641 -5.9490 -1.9880 19 6 6.1544 -5.9026 -1.0430 20 17 6.0186 -7.1610 0.1450 21 6 2.9814 -5.7283 -0.4093 22 8 1.8475 -4.9348 -0.0016 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 4.6602 -3.0304 -1.9922 27 1 6.4556 -3.1150 -3.6744 28 1 8.0611 -4.9820 -3.6699 29 1 7.8672 -6.7688 -1.9874 30 1 2.9681 -5.9075 -1.4843 31 1 3.0215 -6.6674 0.1425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260692116.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:29 Heat of formation + Delta-G solvation = 5.420568 kcal Electronic energy + Delta-G solvation = -17223.844159 eV Core-core repulsion = 14303.729987 eV Total energy + Delta-G solvation = -2920.114172 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.81555 -39.03303 -36.48946 -33.76079 -33.48833 -31.55181 -30.70608 -29.43544 -27.27291 -23.80650 -23.49307 -22.57546 -20.88415 -19.44603 -17.25506 -16.63380 -16.04236 -15.78853 -15.23346 -14.95022 -14.62142 -14.12799 -13.84788 -13.69260 -13.03802 -12.47326 -12.43902 -12.22129 -11.69389 -11.56212 -11.43295 -11.28738 -11.08749 -10.78698 -10.75162 -10.62677 -9.96126 -9.65146 -9.06102 -8.91919 -8.74142 -8.54873 -8.29524 -6.07076 -4.07443 1.11595 1.28411 2.07427 2.92379 3.35940 3.39178 3.43135 3.61100 3.89960 4.47017 4.63265 4.70924 4.82100 5.06921 5.14435 5.22199 5.30807 5.31480 5.44189 5.63104 5.67331 5.87679 6.00992 6.16856 6.35604 6.43597 6.60860 6.84706 7.09681 7.26289 7.31977 7.96885 8.12509 8.63658 9.03996 9.56716 11.05130 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.005530 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.599518 B = 5061.731740 C = 5860.861888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.082 0.918 9 C 0.083 3.917 10 C 0.330 3.670 11 N -0.531 5.531 12 C 0.053 3.947 13 H 0.101 0.899 14 C -0.056 4.056 15 C -0.076 4.076 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.034 4.034 20 Cl -0.076 7.076 21 C 0.029 3.971 22 O -0.352 6.352 23 H 0.263 0.737 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.149 0.851 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.862 -12.405 -4.570 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.100 0.900 9 C 0.046 3.954 10 C 0.107 3.893 11 N -0.267 5.267 12 C -0.057 4.057 13 H 0.119 0.881 14 C -0.058 4.058 15 C -0.095 4.095 16 C -0.136 4.136 17 C -0.132 4.132 18 C -0.135 4.135 19 C -0.061 4.061 20 Cl -0.047 7.047 21 C -0.048 4.048 22 O -0.256 6.256 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.166 0.834 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.095 0.905 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.163 -11.910 -4.394 17.581 hybrid contribution 0.267 -0.086 0.126 0.308 sum 12.430 -11.996 -4.268 17.794 Atomic orbital electron populations 1.69947 1.06059 1.27140 1.50736 1.24996 0.94872 0.99430 0.95212 0.86470 0.79324 0.82323 0.78792 1.20164 1.21435 1.20149 1.21115 0.94450 0.88557 1.50673 0.90029 1.18238 0.91317 0.85996 0.99888 1.27074 0.93313 0.84202 0.84686 1.75036 1.05469 1.18653 1.27565 1.22438 0.94170 0.91365 0.97755 0.88138 1.19459 0.95711 0.93689 0.96903 1.21337 0.97920 0.97906 0.92297 1.21346 0.94946 0.98371 0.98893 1.21097 0.99463 0.94136 0.98504 1.20927 0.97634 1.00083 0.94903 1.20784 0.98830 0.92059 0.94418 1.98350 1.97751 1.51575 1.57031 1.24443 0.83949 0.95527 1.00866 1.87015 1.38304 1.18134 1.82196 0.92739 0.92780 0.92845 0.83383 0.85308 0.85360 0.85182 0.90524 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -13.93 8.95 -34.44 -0.31 -14.24 16 8 H 0.08 2.25 6.77 -52.49 -0.36 1.89 16 9 C 0.08 2.09 5.60 -29.04 -0.16 1.93 16 10 C 0.33 7.36 7.68 -13.62 -0.10 7.26 16 11 N -0.53 -11.41 8.45 -51.72 -0.44 -11.85 16 12 C 0.05 0.92 3.33 -67.50 -0.22 0.70 16 13 H 0.10 1.73 7.60 -51.93 -0.39 1.33 16 14 C -0.06 -0.88 5.09 -104.59 -0.53 -1.42 16 15 C -0.08 -1.20 9.38 -39.59 -0.37 -1.57 16 16 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 17 C -0.11 -1.23 10.05 -39.59 -0.40 -1.63 16 18 C -0.12 -1.33 9.83 -39.55 -0.39 -1.72 16 19 C -0.03 -0.46 6.31 -39.50 -0.25 -0.70 16 20 Cl -0.08 -0.93 27.54 -51.86 -1.43 -2.36 16 21 C 0.03 0.47 7.61 38.13 0.29 0.77 16 22 O -0.35 -7.06 11.17 -15.56 -0.17 -7.24 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 25 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.15 2.65 7.07 -52.48 -0.37 2.27 16 27 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.08 1.17 7.91 -51.93 -0.41 0.76 16 31 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 286.91 15.07 4.32 4.32 Total: -1.00 -28.97 286.91 -8.15 -37.11 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -3.20 Total: -0.26 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.94 Total: -11.04 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.30 Total: -36.98 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.17 Total: -7.24 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.43 Total: -2.36 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.97 -8.15 -37.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260692116.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.535 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds