Wall clock time and date at job start Mon Mar 30 2020 06:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99779 * 2 1 4 4 H 1.48500 * 109.46997 * 240.00256 * 3 2 1 5 5 H 1.48495 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47120 * 120.00346 * 3 2 1 7 7 C 1.37878 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47395 * 179.97438 * 9 7 2 11 11 N 1.28642 * 122.93580 * 359.97438 * 10 9 7 12 12 C 1.47600 * 108.54688 * 180.40967 * 11 10 9 13 13 H 1.09007 * 110.97251 * 256.78619 * 12 11 10 14 14 C 1.50702 * 110.95030 * 133.10123 * 12 11 10 15 15 C 1.38237 * 120.00143 * 347.51281 * 14 12 11 16 16 C 1.38221 * 120.01233 * 179.97438 * 15 14 12 17 17 C 1.38263 * 120.02714 * 359.97438 * 16 15 14 18 18 C 1.38195 * 120.01003 * 359.97438 * 17 16 15 19 19 C 1.38326 * 120.01026 * 167.48881 * 14 12 11 20 20 Cl 1.73600 * 120.01508 * 0.02562 * 19 14 12 21 21 C 1.54850 * 101.89804 * 14.94709 * 12 11 10 22 22 O 1.34595 * 122.94222 * 179.97438 * 10 9 7 23 23 H 0.96997 * 120.00010 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47480 * 59.99984 * 9 7 2 25 25 H 1.09003 * 109.47222 * 299.99747 * 9 7 2 26 26 H 1.08003 * 119.99824 * 359.95431 * 15 14 12 27 27 H 1.08002 * 119.98422 * 180.02562 * 16 15 14 28 28 H 1.07999 * 119.99487 * 180.27557 * 17 16 15 29 29 H 1.08002 * 120.00463 * 179.97438 * 18 17 16 30 30 H 1.08998 * 111.07314 * 94.73688 * 21 12 11 31 31 H 1.08994 * 111.07962 * 218.77655 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0018 11 7 3.5056 -3.4745 -0.0032 12 6 4.1558 -4.7995 -0.0141 13 1 4.5386 -5.0545 0.9742 14 6 5.2544 -4.8522 -1.0444 15 6 5.3631 -3.8504 -1.9907 16 6 6.3709 -3.8981 -2.9355 17 6 7.2712 -4.9475 -2.9343 18 6 7.1641 -5.9490 -1.9880 19 6 6.1544 -5.9026 -1.0430 20 17 6.0186 -7.1610 0.1450 21 6 2.9814 -5.7283 -0.4093 22 8 1.8475 -4.9348 -0.0016 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 4.6602 -3.0304 -1.9922 27 1 6.4556 -3.1150 -3.6744 28 1 8.0611 -4.9820 -3.6699 29 1 7.8672 -6.7688 -1.9874 30 1 2.9681 -5.9075 -1.4843 31 1 3.0215 -6.6674 0.1425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260692116.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:29 Heat of formation + Delta-G solvation = -12.733610 kcal Electronic energy + Delta-G solvation = -17224.631384 eV Core-core repulsion = 14303.729987 eV Total energy + Delta-G solvation = -2920.901396 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.31311 -40.11060 -37.46310 -35.60670 -35.04190 -33.23902 -31.70235 -30.93817 -28.90375 -25.60545 -24.92155 -23.62810 -22.07424 -21.15192 -18.39977 -18.35449 -17.81430 -17.12732 -16.54560 -16.40889 -16.09103 -15.59789 -14.99005 -14.75194 -14.36569 -14.30719 -14.08937 -13.50822 -13.42646 -12.86248 -12.71780 -12.57543 -12.48888 -12.38483 -12.34428 -11.91798 -11.76628 -11.54552 -10.88193 -10.61708 -10.14256 -9.84715 -9.65693 -8.20284 -6.27437 0.11602 0.27614 1.07984 1.22753 1.44785 1.47577 1.55633 2.30220 2.53543 2.60804 3.15919 3.23368 3.47508 3.73773 3.87599 3.96883 4.11553 4.30423 4.38566 4.45389 4.56032 4.66272 4.85872 4.97283 5.13271 5.20291 5.23886 5.35024 5.48597 5.53094 5.81713 5.84737 6.07156 6.82814 6.98654 7.40471 8.92449 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.005530 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.599518 B = 5061.731740 C = 5860.861888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.076 0.924 9 C 0.088 3.912 10 C 0.320 3.680 11 N -0.544 5.544 12 C 0.054 3.946 13 H 0.102 0.898 14 C -0.077 4.077 15 C -0.104 4.104 16 C -0.117 4.117 17 C -0.100 4.100 18 C -0.110 4.110 19 C -0.039 4.039 20 Cl -0.068 7.068 21 C 0.032 3.968 22 O -0.362 6.362 23 H 0.266 0.734 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.114 0.886 27 H 0.147 0.853 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.086 0.914 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.474 -13.331 -5.514 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.094 0.906 9 C 0.051 3.949 10 C 0.096 3.904 11 N -0.280 5.280 12 C -0.056 4.056 13 H 0.120 0.880 14 C -0.079 4.079 15 C -0.122 4.122 16 C -0.135 4.135 17 C -0.117 4.117 18 C -0.128 4.128 19 C -0.066 4.066 20 Cl -0.039 7.039 21 C -0.045 4.045 22 O -0.267 6.267 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.132 0.868 27 H 0.165 0.835 28 H 0.186 0.814 29 H 0.178 0.822 30 H 0.104 0.896 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.783 -12.856 -5.340 20.306 hybrid contribution -0.454 0.097 0.392 0.608 sum 14.329 -12.759 -4.947 19.814 Atomic orbital electron populations 1.70054 1.07439 1.28113 1.51453 1.25820 0.95706 1.02831 0.94711 0.85459 0.78164 0.78166 0.78972 1.19351 1.20626 1.19811 1.21329 0.94321 0.89740 1.50633 0.90622 1.17912 0.91573 0.87060 0.98374 1.26389 0.93067 0.84516 0.86433 1.74935 1.05337 1.21864 1.25882 1.22477 0.94945 0.89388 0.98778 0.88033 1.19322 0.96293 0.95212 0.97027 1.21184 0.99105 0.97622 0.94319 1.21576 0.94159 0.99553 0.98234 1.21535 0.99203 0.92536 0.98468 1.21349 0.96949 1.00812 0.93714 1.20861 0.98873 0.91695 0.95197 1.98352 1.97761 1.50933 1.56844 1.24690 0.82117 0.95708 1.01944 1.86971 1.39973 1.17392 1.82330 0.92512 0.94311 0.94637 0.86757 0.83484 0.81410 0.82189 0.89576 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.52 -29.47 8.95 25.60 0.23 -29.24 16 8 H 0.08 4.29 6.77 -2.91 -0.02 4.27 16 9 C 0.09 4.68 5.60 29.10 0.16 4.84 16 10 C 0.32 14.82 7.68 88.57 0.68 15.50 16 11 N -0.54 -24.07 8.45 -432.77 -3.66 -27.73 16 12 C 0.05 1.87 3.33 44.67 0.15 2.02 16 13 H 0.10 3.46 7.60 -2.38 -0.02 3.44 16 14 C -0.08 -2.37 5.09 -19.84 -0.10 -2.47 16 15 C -0.10 -3.23 9.38 22.27 0.21 -3.03 16 16 C -0.12 -2.69 10.05 22.27 0.22 -2.46 16 17 C -0.10 -1.75 10.05 22.27 0.22 -1.52 16 18 C -0.11 -2.08 9.83 22.29 0.22 -1.86 16 19 C -0.04 -0.96 6.31 22.32 0.14 -0.82 16 20 Cl -0.07 -1.50 27.54 -2.72 -0.07 -1.58 16 21 C 0.03 1.00 7.61 72.61 0.55 1.56 16 22 O -0.36 -14.80 11.17 -78.60 -0.88 -15.68 16 23 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.11 4.29 7.07 -2.91 -0.02 4.27 16 27 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 28 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 30 H 0.09 2.57 7.91 -2.39 -0.02 2.56 16 31 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -63.79 286.91 2.00 -61.79 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.14 Total: 7.77 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 3.15 Total: -16.60 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -3.37 Total: -82.12 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.88 Total: -15.68 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.58 kcal Total: -63.79 2.00 -61.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260692116.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.057 kcal (2) G-P(sol) polarization free energy of solvation -63.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds