Wall clock time and date at job start Mon Mar 30 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30601 * 1 3 3 Si 1.86797 * 120.00250 * 2 1 4 4 H 1.48500 * 109.47109 * 240.00101 * 3 2 1 5 5 H 1.48503 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47213 * 119.99791 * 3 2 1 7 7 C 1.40222 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99655 * 180.02562 * 7 2 1 9 9 C 1.41250 * 120.00175 * 359.97438 * 7 2 1 10 10 N 1.30638 * 123.22724 * 0.02562 * 9 7 2 11 11 C 1.47582 * 108.34136 * 179.35306 * 10 9 7 12 12 C 1.54792 * 102.10458 * 345.00701 * 11 10 9 13 13 H 1.09004 * 111.05174 * 265.59927 * 12 11 10 14 14 C 1.52996 * 111.01501 * 141.73009 * 12 11 10 15 15 C 1.50699 * 109.46872 * 181.42295 * 14 12 11 16 16 C 1.38239 * 120.00960 * 265.31745 * 15 14 12 17 17 C 1.38219 * 120.01728 * 180.29971 * 16 15 14 18 18 C 1.38269 * 120.02322 * 359.67884 * 17 16 15 19 19 C 1.38196 * 120.01466 * 0.02562 * 18 17 16 20 20 C 1.38333 * 120.00617 * 84.99914 * 15 14 12 21 21 Cl 1.73599 * 120.01540 * 359.97438 * 20 15 14 22 22 O 1.35198 * 123.22637 * 180.02562 * 9 7 2 23 23 H 0.97005 * 119.99953 * 0.02562 * 1 2 3 24 24 H 1.09008 * 110.90110 * 226.81184 * 11 10 9 25 25 H 1.08993 * 110.90812 * 103.21259 * 11 10 9 26 26 H 1.08993 * 109.47490 * 61.42513 * 14 12 11 27 27 H 1.09005 * 109.47260 * 301.42179 * 14 12 11 28 28 H 1.07997 * 119.99019 * 0.02562 * 16 15 14 29 29 H 1.07992 * 119.99162 * 179.70733 * 17 16 15 30 30 H 1.08003 * 119.99363 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.00788 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0938 1.6963 -1.2125 5 1 1.2751 2.7464 -0.0006 6 1 3.0937 1.6963 1.2125 7 6 2.0071 -1.2144 0.0005 8 1 3.0871 -1.2144 0.0010 9 6 1.3008 -2.4376 0.0016 10 7 -0.0035 -2.5112 0.0017 11 6 -0.3884 -3.9358 -0.0128 12 6 0.9382 -4.6263 -0.4124 13 1 0.9846 -4.7920 -1.4888 14 6 1.1247 -5.9394 0.3504 15 6 2.4401 -6.5635 -0.0383 16 6 2.4847 -7.5151 -1.0401 17 6 3.6902 -8.0921 -1.3925 18 6 4.8533 -7.7133 -0.7478 19 6 4.8109 -6.7577 0.2497 20 6 3.6042 -6.1796 0.6028 21 17 3.5505 -4.9783 1.8549 22 8 1.9098 -3.6447 0.0027 23 1 -0.4850 0.8401 -0.0004 24 1 -1.1631 -4.1218 -0.7568 25 1 -0.7138 -4.2609 0.9753 26 1 0.3116 -6.6219 0.1032 27 1 1.1193 -5.7409 1.4222 28 1 1.5767 -7.8108 -1.5445 29 1 3.7239 -8.8389 -2.1719 30 1 5.7950 -8.1642 -1.0238 31 1 5.7195 -6.4616 0.7529 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260695013.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:17 Heat of formation + Delta-G solvation = 1.401194 kcal Electronic energy + Delta-G solvation = -17491.816034 eV Core-core repulsion = 14571.527568 eV Total energy + Delta-G solvation = -2920.288465 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63738 -38.76081 -35.93527 -33.81992 -32.95882 -31.22467 -30.58219 -29.33001 -26.82830 -24.24096 -22.55769 -21.53650 -20.72890 -19.71360 -16.91830 -16.67342 -15.81703 -15.30518 -15.16451 -14.75275 -14.27852 -13.69692 -13.63913 -13.16374 -12.75825 -12.33882 -11.91122 -11.89236 -11.47992 -11.30745 -11.22895 -11.13584 -10.96926 -10.68761 -10.44707 -10.31796 -10.11280 -9.95675 -9.06568 -8.77871 -8.38707 -7.70527 -7.26335 -6.35354 -4.56418 1.32207 1.37139 2.60514 3.13675 3.18816 3.21469 3.74276 4.05422 4.21474 4.73102 4.86655 4.97348 5.04213 5.29858 5.40480 5.46850 5.66356 5.70259 5.83625 5.86319 6.01045 6.15087 6.30868 6.37210 6.46531 6.60343 6.63672 6.89665 6.91560 7.00859 7.42039 7.88586 8.29158 8.86431 9.07447 10.20930 10.56031 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027052 B = 0.005955 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.785097 B = 4700.874018 C = 5178.727380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.078 3.922 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.450 4.450 8 H 0.081 0.919 9 C 0.378 3.622 10 N -0.602 5.602 11 C 0.009 3.991 12 C 0.054 3.946 13 H 0.064 0.936 14 C -0.077 4.077 15 C -0.065 4.065 16 C -0.110 4.110 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.017 4.017 21 Cl -0.043 7.043 22 O -0.352 6.352 23 H 0.271 0.729 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 -12.947 -0.648 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.178 3.822 10 N -0.349 5.349 11 C -0.122 4.122 12 C -0.005 4.005 13 H 0.082 0.918 14 C -0.114 4.114 15 C -0.066 4.066 16 C -0.128 4.128 17 C -0.141 4.141 18 C -0.137 4.137 19 C -0.135 4.135 20 C -0.044 4.044 21 Cl -0.014 7.014 22 O -0.260 6.260 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.578 -12.365 -0.461 13.573 hybrid contribution 0.771 0.097 -0.041 0.778 sum 6.349 -12.268 -0.502 13.823 Atomic orbital electron populations 1.70018 1.06931 1.27604 1.31470 1.25724 0.94795 1.00305 0.93733 0.86298 0.79777 0.80397 0.79688 1.19130 1.20406 1.19120 1.18479 0.93845 0.86633 1.49908 0.90111 1.21951 0.88036 0.84006 0.88251 1.76250 1.09254 1.07561 1.41801 1.23817 0.95244 0.94590 0.98513 1.23666 0.91337 0.88526 0.96958 0.91839 1.20783 0.93190 0.95516 1.01919 1.19818 0.94909 0.96103 0.95744 1.21007 0.98405 0.96591 0.96808 1.21126 0.92604 1.00300 1.00048 1.21022 0.98470 0.97776 0.96415 1.21049 0.96567 0.97321 0.98519 1.20908 0.94516 0.94126 0.94875 1.98412 1.98592 1.54254 1.50153 1.87064 1.38723 1.16711 1.83457 0.91766 0.92744 0.93836 0.89832 0.89728 0.85489 0.85878 0.85656 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.88 11.74 55.56 0.65 -20.23 16 2 C 0.08 2.11 5.50 -17.33 -0.10 2.01 16 3 Si 0.91 19.76 29.56 -169.99 -5.02 14.74 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.45 -12.81 9.50 -37.69 -0.36 -13.17 16 8 H 0.08 2.19 7.85 -52.49 -0.41 1.78 16 9 C 0.38 10.78 7.43 -16.92 -0.13 10.65 16 10 N -0.60 -17.40 9.69 -59.53 -0.58 -17.97 16 11 C 0.01 0.22 7.68 -2.51 -0.02 0.20 16 12 C 0.05 1.15 3.71 -25.79 -0.10 1.06 16 13 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 14 C -0.08 -1.29 4.70 -27.89 -0.13 -1.42 16 15 C -0.06 -1.03 5.06 -104.59 -0.53 -1.56 16 16 C -0.11 -1.45 9.68 -39.59 -0.38 -1.84 16 17 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 18 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 19 C -0.12 -1.60 9.83 -39.54 -0.39 -1.99 16 20 C -0.02 -0.29 6.11 -39.49 -0.24 -0.53 16 21 Cl -0.04 -0.79 25.29 -51.86 -1.31 -2.10 16 22 O -0.35 -8.81 8.37 -17.29 -0.14 -8.96 16 23 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 24 H 0.05 1.20 8.14 -51.92 -0.42 0.77 16 25 H 0.04 0.98 7.91 -51.93 -0.41 0.57 16 26 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 27 H 0.08 1.51 7.13 -51.93 -0.37 1.14 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 283.01 15.07 4.26 4.26 Total: -1.00 -31.78 283.01 -8.59 -40.37 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.28 Total: 0.09 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -3.16 Total: -10.20 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.08 Total: -38.20 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.14 Total: -8.96 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.31 Total: -2.10 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.78 -8.59 -40.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260695013.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.768 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds