Wall clock time and date at job start Mon Mar 30 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30601 * 1 3 3 Si 1.86797 * 120.00250 * 2 1 4 4 H 1.48500 * 109.47109 * 240.00101 * 3 2 1 5 5 H 1.48503 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47213 * 119.99791 * 3 2 1 7 7 C 1.40222 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99655 * 180.02562 * 7 2 1 9 9 C 1.41250 * 120.00175 * 359.97438 * 7 2 1 10 10 N 1.30638 * 123.22724 * 0.02562 * 9 7 2 11 11 C 1.47582 * 108.34136 * 179.35306 * 10 9 7 12 12 C 1.54792 * 102.10458 * 345.00701 * 11 10 9 13 13 H 1.09004 * 111.05174 * 265.59927 * 12 11 10 14 14 C 1.52996 * 111.01501 * 141.73009 * 12 11 10 15 15 C 1.50699 * 109.46872 * 181.42295 * 14 12 11 16 16 C 1.38239 * 120.00960 * 265.31745 * 15 14 12 17 17 C 1.38219 * 120.01728 * 180.29971 * 16 15 14 18 18 C 1.38269 * 120.02322 * 359.67884 * 17 16 15 19 19 C 1.38196 * 120.01466 * 0.02562 * 18 17 16 20 20 C 1.38333 * 120.00617 * 84.99914 * 15 14 12 21 21 Cl 1.73599 * 120.01540 * 359.97438 * 20 15 14 22 22 O 1.35198 * 123.22637 * 180.02562 * 9 7 2 23 23 H 0.97005 * 119.99953 * 0.02562 * 1 2 3 24 24 H 1.09008 * 110.90110 * 226.81184 * 11 10 9 25 25 H 1.08993 * 110.90812 * 103.21259 * 11 10 9 26 26 H 1.08993 * 109.47490 * 61.42513 * 14 12 11 27 27 H 1.09005 * 109.47260 * 301.42179 * 14 12 11 28 28 H 1.07997 * 119.99019 * 0.02562 * 16 15 14 29 29 H 1.07992 * 119.99162 * 179.70733 * 17 16 15 30 30 H 1.08003 * 119.99363 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.00788 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0938 1.6963 -1.2125 5 1 1.2751 2.7464 -0.0006 6 1 3.0937 1.6963 1.2125 7 6 2.0071 -1.2144 0.0005 8 1 3.0871 -1.2144 0.0010 9 6 1.3008 -2.4376 0.0016 10 7 -0.0035 -2.5112 0.0017 11 6 -0.3884 -3.9358 -0.0128 12 6 0.9382 -4.6263 -0.4124 13 1 0.9846 -4.7920 -1.4888 14 6 1.1247 -5.9394 0.3504 15 6 2.4401 -6.5635 -0.0383 16 6 2.4847 -7.5151 -1.0401 17 6 3.6902 -8.0921 -1.3925 18 6 4.8533 -7.7133 -0.7478 19 6 4.8109 -6.7577 0.2497 20 6 3.6042 -6.1796 0.6028 21 17 3.5505 -4.9783 1.8549 22 8 1.9098 -3.6447 0.0027 23 1 -0.4850 0.8401 -0.0004 24 1 -1.1631 -4.1218 -0.7568 25 1 -0.7138 -4.2609 0.9753 26 1 0.3116 -6.6219 0.1032 27 1 1.1193 -5.7409 1.4222 28 1 1.5767 -7.8108 -1.5445 29 1 3.7239 -8.8389 -2.1719 30 1 5.7950 -8.1642 -1.0238 31 1 5.7195 -6.4616 0.7529 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260695013.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:16 Heat of formation + Delta-G solvation = -20.016954 kcal Electronic energy + Delta-G solvation = -17492.744794 eV Core-core repulsion = 14571.527568 eV Total energy + Delta-G solvation = -2921.217226 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28677 -40.08279 -37.19335 -35.67604 -34.47635 -33.19654 -31.61524 -30.93997 -28.58660 -25.93334 -23.59642 -23.01632 -22.40785 -21.47446 -18.71911 -17.99587 -17.35095 -17.16264 -16.38260 -16.08425 -15.88557 -15.39885 -14.72640 -14.39601 -14.22204 -14.00290 -13.71123 -13.41822 -12.99676 -12.92830 -12.75605 -12.40738 -12.32352 -12.28154 -12.09588 -11.93303 -11.86201 -11.49103 -11.01101 -9.92481 -9.70399 -9.49681 -9.28876 -8.38094 -6.73178 0.26471 0.34677 1.39966 1.41693 1.42587 1.56081 2.17507 2.26254 2.71183 3.07337 3.39717 3.67789 3.87288 4.06156 4.14948 4.16331 4.22817 4.42709 4.48031 4.67142 4.73224 4.74692 4.87624 4.98798 5.04415 5.14671 5.35217 5.39121 5.48173 5.51353 5.92472 5.96743 6.16603 6.77157 6.96160 8.15246 8.55314 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027052 B = 0.005955 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.785097 B = 4700.874018 C = 5178.727380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.033 3.967 3 Si 0.996 3.004 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.486 4.486 8 H 0.082 0.918 9 C 0.361 3.639 10 N -0.647 5.647 11 C 0.006 3.994 12 C 0.058 3.942 13 H 0.067 0.933 14 C -0.065 4.065 15 C -0.091 4.091 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.127 4.127 20 C -0.044 4.044 21 Cl -0.077 7.077 22 O -0.357 6.357 23 H 0.279 0.721 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.576 -14.177 -1.958 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.188 4.188 3 Si 0.815 3.185 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.524 4.524 8 H 0.100 0.900 9 C 0.160 3.840 10 N -0.394 5.394 11 C -0.125 4.125 12 C -0.001 4.001 13 H 0.085 0.915 14 C -0.102 4.102 15 C -0.092 4.092 16 C -0.129 4.129 17 C -0.134 4.134 18 C -0.128 4.128 19 C -0.146 4.146 20 C -0.070 4.070 21 Cl -0.048 7.048 22 O -0.265 6.265 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.134 0.866 27 H 0.086 0.914 28 H 0.168 0.832 29 H 0.179 0.821 30 H 0.179 0.821 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.805 -13.632 -1.773 15.338 hybrid contribution 0.383 0.304 0.302 0.575 sum 7.188 -13.328 -1.471 15.214 Atomic orbital electron populations 1.70131 1.08857 1.29195 1.31895 1.26789 0.95692 1.03988 0.92299 0.85073 0.78381 0.74922 0.80082 1.18110 1.19022 1.18400 1.18931 0.94255 0.87875 1.51362 0.90005 1.22207 0.88437 0.85162 0.88191 1.76141 1.09883 1.11102 1.42275 1.23835 0.96743 0.92778 0.99134 1.23816 0.89052 0.89449 0.97772 0.91534 1.20676 0.95507 0.93805 1.00259 1.19846 0.93931 0.97881 0.97525 1.21341 1.00309 0.95537 0.95696 1.21603 0.91659 1.00029 1.00061 1.21485 1.00255 0.96296 0.94775 1.21311 0.96038 0.97846 0.99358 1.21183 0.96056 0.94575 0.95212 1.98392 1.98696 1.55888 1.51814 1.87051 1.39598 1.16401 1.83439 0.91073 0.91570 0.93521 0.86598 0.91373 0.83172 0.82144 0.82136 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.92 11.74 21.87 0.26 -44.67 16 2 C 0.03 1.78 5.50 85.36 0.47 2.25 16 3 Si 1.00 40.62 29.56 68.60 2.03 42.65 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 7 C -0.49 -28.44 9.50 23.49 0.22 -28.22 16 8 H 0.08 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.36 21.25 7.43 85.61 0.64 21.89 16 10 N -0.65 -38.50 9.69 -456.20 -4.42 -42.92 16 11 C 0.01 0.28 7.68 86.78 0.67 0.95 16 12 C 0.06 2.46 3.71 31.20 0.12 2.57 16 13 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 14 C -0.07 -2.17 4.70 29.85 0.14 -2.03 16 15 C -0.09 -2.79 5.06 -19.84 -0.10 -2.89 16 16 C -0.11 -2.59 9.68 22.27 0.22 -2.37 16 17 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 18 C -0.11 -2.18 10.05 22.27 0.22 -1.96 16 19 C -0.13 -3.30 9.83 22.29 0.22 -3.08 16 20 C -0.04 -1.42 6.11 22.33 0.14 -1.28 16 21 Cl -0.08 -2.90 25.29 -2.72 -0.07 -2.97 16 22 O -0.36 -18.41 8.37 -84.78 -0.71 -19.12 16 23 H 0.28 14.62 8.29 -92.70 -0.77 13.85 16 24 H 0.07 2.92 8.14 -2.38 -0.02 2.91 16 25 H 0.05 2.16 7.91 -2.39 -0.02 2.14 16 26 H 0.12 3.00 8.05 -2.39 -0.02 2.99 16 27 H 0.07 2.48 7.13 -2.38 -0.02 2.46 16 28 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -71.52 283.01 1.40 -70.12 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.14 Total: 13.05 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 3.17 Total: -16.15 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -4.16 Total: -87.58 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.71 Total: -19.12 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -0.07 Total: -2.97 kcal Total: -71.52 1.40 -70.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260695013.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.103 kcal (2) G-P(sol) polarization free energy of solvation -71.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds