Wall clock time and date at job start Mon Mar 30 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30598 * 1 3 3 Si 1.86800 * 120.00465 * 2 1 4 4 H 1.48502 * 109.47252 * 270.00464 * 3 2 1 5 5 H 1.48502 * 109.46895 * 30.00389 * 3 2 1 6 6 H 1.48493 * 109.47251 * 150.00255 * 3 2 1 7 7 C 1.40223 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99678 * 179.97438 * 7 2 1 9 9 C 1.41253 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.30631 * 123.22872 * 359.96710 * 9 7 2 11 11 C 1.47583 * 108.34274 * 180.66007 * 10 9 7 12 12 C 1.54789 * 102.10510 * 14.99015 * 11 10 9 13 13 H 1.08994 * 111.05281 * 94.39980 * 12 11 10 14 14 C 1.53002 * 111.01586 * 218.27316 * 12 11 10 15 15 C 1.50700 * 109.46823 * 178.57703 * 14 12 11 16 16 C 1.38240 * 120.00498 * 265.27471 * 15 14 12 17 17 C 1.38219 * 120.01161 * 180.26174 * 16 15 14 18 18 C 1.38272 * 120.02538 * 359.44036 * 17 16 15 19 19 C 1.38194 * 120.01253 * 0.30649 * 18 17 16 20 20 C 1.38321 * 120.00717 * 85.00072 * 15 14 12 21 21 Cl 1.73599 * 120.01374 * 0.04072 * 20 15 14 22 22 O 1.35200 * 123.22448 * 179.97438 * 9 7 2 23 23 H 0.97006 * 119.99827 * 359.97438 * 1 2 3 24 24 H 1.08996 * 110.90154 * 256.78975 * 11 10 9 25 25 H 1.08997 * 110.90251 * 133.19277 * 11 10 9 26 26 H 1.09002 * 109.46884 * 58.57727 * 14 12 11 27 27 H 1.08997 * 109.46881 * 298.57489 * 14 12 11 28 28 H 1.08002 * 119.99687 * 359.97438 * 16 15 14 29 29 H 1.08002 * 119.99072 * 179.72631 * 17 16 15 30 30 H 1.08001 * 119.99055 * 180.27778 * 18 17 16 31 31 H 1.07993 * 120.00574 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.4876 2.0464 -1.4001 5 1 1.4376 2.6526 0.7001 6 1 3.5376 1.4400 0.6999 7 6 2.0070 -1.2144 -0.0005 8 1 3.0870 -1.2144 -0.0010 9 6 1.3007 -2.4377 -0.0005 10 7 -0.0035 -2.5112 0.0006 11 6 -0.3884 -3.9358 0.0163 12 6 0.9384 -4.6261 0.4151 13 1 0.9859 -4.7911 1.4914 14 6 1.1243 -5.9397 -0.3472 15 6 2.4401 -6.5636 0.0407 16 6 3.5666 -6.3352 -0.7274 17 6 4.7722 -6.9118 -0.3748 18 6 4.8550 -7.7079 0.7527 19 6 3.7307 -7.9327 1.5242 20 6 2.5221 -7.3604 1.1684 21 17 1.1092 -7.6427 2.1368 22 8 1.9097 -3.6447 -0.0016 23 1 -0.4850 0.8401 0.0004 24 1 -0.7147 -4.2614 -0.9714 25 1 -1.1625 -4.1213 0.7609 26 1 1.1179 -5.7417 -1.4191 27 1 0.3114 -6.6220 -0.0988 28 1 3.5035 -5.7099 -1.6057 29 1 5.6511 -6.7367 -0.9776 30 1 5.7984 -8.1545 1.0301 31 1 3.7953 -8.5549 2.4045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260695016.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:18 Heat of formation + Delta-G solvation = -3.037163 kcal Electronic energy + Delta-G solvation = -17295.123392 eV Core-core repulsion = 14374.642465 eV Total energy + Delta-G solvation = -2920.480927 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.70566 -38.83105 -36.32794 -33.86157 -33.00256 -31.30300 -30.63899 -29.38204 -26.87505 -24.27456 -22.61060 -21.57783 -20.79267 -19.77087 -16.98150 -16.73167 -15.88550 -15.37509 -15.20826 -14.82680 -14.28612 -13.74692 -13.67835 -13.31652 -12.88228 -12.35894 -11.95101 -11.90428 -11.58472 -11.48891 -11.32387 -11.23970 -11.04768 -10.78034 -10.67412 -10.43102 -10.19436 -9.97189 -9.12202 -8.78798 -8.55115 -7.76208 -7.33627 -6.39419 -4.61317 1.24348 1.37228 2.24385 3.09287 3.17194 3.21217 3.71493 4.02151 4.16645 4.69861 4.82747 4.94155 5.02173 5.33957 5.36576 5.44606 5.60084 5.69653 5.82510 5.89085 5.94826 6.15469 6.25718 6.33367 6.47527 6.60025 6.63071 6.87729 6.87990 6.96934 7.37659 7.80753 8.24219 8.81500 9.01471 10.14600 10.51876 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026414 B = 0.005336 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.774866 B = 5245.897158 C = 5868.836423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.077 3.923 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.451 4.451 8 H 0.082 0.918 9 C 0.375 3.625 10 N -0.599 5.599 11 C 0.009 3.991 12 C 0.057 3.943 13 H 0.068 0.932 14 C -0.076 4.076 15 C -0.058 4.058 16 C -0.089 4.089 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.036 4.036 21 Cl -0.073 7.073 22 O -0.366 6.366 23 H 0.272 0.728 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -13.088 0.822 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.175 3.825 10 N -0.345 5.345 11 C -0.123 4.123 12 C -0.002 4.002 13 H 0.086 0.914 14 C -0.114 4.114 15 C -0.058 4.058 16 C -0.107 4.107 17 C -0.133 4.133 18 C -0.137 4.137 19 C -0.133 4.133 20 C -0.062 4.062 21 Cl -0.044 7.044 22 O -0.275 6.275 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.430 -12.650 0.850 13.793 hybrid contribution 0.634 -0.014 0.219 0.671 sum 6.064 -12.665 1.069 14.082 Atomic orbital electron populations 1.70025 1.06977 1.27625 1.31256 1.25739 0.94824 1.00376 0.93702 0.86204 0.80155 0.80604 0.79021 1.19548 1.20269 1.18698 1.18531 0.93904 0.86578 1.49954 0.89981 1.22002 0.88097 0.83815 0.88613 1.76245 1.09113 1.07688 1.41497 1.23821 0.95358 0.94412 0.98661 1.23650 0.90996 0.88123 0.97411 0.91397 1.20781 0.93620 0.95598 1.01390 1.19794 0.97070 0.95456 0.93515 1.21091 0.91491 0.98110 0.99990 1.21235 0.97852 0.97120 0.97116 1.21031 0.97862 0.99496 0.95350 1.20957 0.91168 1.00625 1.00517 1.20827 0.88699 1.01991 0.94730 1.98352 1.40450 1.95225 1.70404 1.86945 1.39585 1.17215 1.83732 0.91722 0.93726 0.92510 0.90036 0.89412 0.84911 0.85581 0.85508 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.72 11.74 55.56 0.65 -20.07 16 2 C 0.08 2.07 5.50 -17.33 -0.10 1.98 16 3 Si 0.92 19.47 29.56 -169.99 -5.02 14.45 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.45 -12.77 9.50 -37.69 -0.36 -13.12 16 8 H 0.08 2.19 7.85 -52.49 -0.41 1.78 16 9 C 0.38 10.76 7.43 -16.92 -0.13 10.63 16 10 N -0.60 -17.38 9.69 -59.54 -0.58 -17.95 16 11 C 0.01 0.20 7.68 -2.51 -0.02 0.18 16 12 C 0.06 1.23 3.71 -25.79 -0.10 1.14 16 13 H 0.07 1.48 8.04 -51.93 -0.42 1.07 16 14 C -0.08 -1.31 4.58 -27.88 -0.13 -1.44 16 15 C -0.06 -0.92 4.99 -104.59 -0.52 -1.44 16 16 C -0.09 -1.32 9.68 -39.59 -0.38 -1.70 16 17 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 18 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 19 C -0.11 -1.44 9.83 -39.55 -0.39 -1.83 16 20 C -0.04 -0.53 6.31 -39.50 -0.25 -0.78 16 21 Cl -0.07 -1.04 27.29 -51.86 -1.42 -2.45 16 22 O -0.37 -9.36 10.75 -17.30 -0.19 -9.55 16 23 H 0.27 6.95 8.29 -40.82 -0.34 6.61 16 24 H 0.04 1.01 7.91 -51.93 -0.41 0.60 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 27 H 0.09 1.35 7.12 -51.93 -0.37 0.98 16 28 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 287.30 15.07 4.33 4.33 Total: -1.00 -31.43 287.30 -8.66 -40.08 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.28 Total: 1.15 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.16 Total: -9.99 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.08 Total: -38.02 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.19 Total: -9.55 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.42 Total: -2.45 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.43 -8.66 -40.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260695016.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.047 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds