Wall clock time and date at job start Mon Mar 30 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30598 * 1 3 3 Si 1.86800 * 120.00465 * 2 1 4 4 H 1.48502 * 109.47252 * 270.00464 * 3 2 1 5 5 H 1.48502 * 109.46895 * 30.00389 * 3 2 1 6 6 H 1.48493 * 109.47251 * 150.00255 * 3 2 1 7 7 C 1.40223 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99678 * 179.97438 * 7 2 1 9 9 C 1.41253 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.30631 * 123.22872 * 359.96710 * 9 7 2 11 11 C 1.47583 * 108.34274 * 180.66007 * 10 9 7 12 12 C 1.54789 * 102.10510 * 14.99015 * 11 10 9 13 13 H 1.08994 * 111.05281 * 94.39980 * 12 11 10 14 14 C 1.53002 * 111.01586 * 218.27316 * 12 11 10 15 15 C 1.50700 * 109.46823 * 178.57703 * 14 12 11 16 16 C 1.38240 * 120.00498 * 265.27471 * 15 14 12 17 17 C 1.38219 * 120.01161 * 180.26174 * 16 15 14 18 18 C 1.38272 * 120.02538 * 359.44036 * 17 16 15 19 19 C 1.38194 * 120.01253 * 0.30649 * 18 17 16 20 20 C 1.38321 * 120.00717 * 85.00072 * 15 14 12 21 21 Cl 1.73599 * 120.01374 * 0.04072 * 20 15 14 22 22 O 1.35200 * 123.22448 * 179.97438 * 9 7 2 23 23 H 0.97006 * 119.99827 * 359.97438 * 1 2 3 24 24 H 1.08996 * 110.90154 * 256.78975 * 11 10 9 25 25 H 1.08997 * 110.90251 * 133.19277 * 11 10 9 26 26 H 1.09002 * 109.46884 * 58.57727 * 14 12 11 27 27 H 1.08997 * 109.46881 * 298.57489 * 14 12 11 28 28 H 1.08002 * 119.99687 * 359.97438 * 16 15 14 29 29 H 1.08002 * 119.99072 * 179.72631 * 17 16 15 30 30 H 1.08001 * 119.99055 * 180.27778 * 18 17 16 31 31 H 1.07993 * 120.00574 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.4876 2.0464 -1.4001 5 1 1.4376 2.6526 0.7001 6 1 3.5376 1.4400 0.6999 7 6 2.0070 -1.2144 -0.0005 8 1 3.0870 -1.2144 -0.0010 9 6 1.3007 -2.4377 -0.0005 10 7 -0.0035 -2.5112 0.0006 11 6 -0.3884 -3.9358 0.0163 12 6 0.9384 -4.6261 0.4151 13 1 0.9859 -4.7911 1.4914 14 6 1.1243 -5.9397 -0.3472 15 6 2.4401 -6.5636 0.0407 16 6 3.5666 -6.3352 -0.7274 17 6 4.7722 -6.9118 -0.3748 18 6 4.8550 -7.7079 0.7527 19 6 3.7307 -7.9327 1.5242 20 6 2.5221 -7.3604 1.1684 21 17 1.1092 -7.6427 2.1368 22 8 1.9097 -3.6447 -0.0016 23 1 -0.4850 0.8401 0.0004 24 1 -0.7147 -4.2614 -0.9714 25 1 -1.1625 -4.1213 0.7609 26 1 1.1179 -5.7417 -1.4191 27 1 0.3114 -6.6220 -0.0988 28 1 3.5035 -5.7099 -1.6057 29 1 5.6511 -6.7367 -0.9776 30 1 5.7984 -8.1545 1.0301 31 1 3.7953 -8.5549 2.4045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260695016.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:18 Heat of formation + Delta-G solvation = -23.989241 kcal Electronic energy + Delta-G solvation = -17296.031942 eV Core-core repulsion = 14374.642465 eV Total energy + Delta-G solvation = -2921.389477 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.39546 -40.15539 -37.41525 -35.72057 -34.53811 -33.30048 -31.67712 -31.00901 -28.64013 -25.98710 -23.65285 -23.08868 -22.49831 -21.55277 -18.79470 -18.04586 -17.41940 -17.24406 -16.47959 -16.13872 -15.91705 -15.42672 -14.77598 -14.58378 -14.27102 -14.07055 -13.76137 -13.47057 -13.03222 -12.94488 -12.83107 -12.57873 -12.36982 -12.29816 -12.25096 -12.09663 -11.84891 -11.59155 -11.05803 -9.99172 -9.77006 -9.57420 -9.39764 -8.40866 -6.77716 0.19445 0.32683 1.15551 1.41182 1.43719 1.59989 2.13140 2.25419 2.66873 2.97958 3.34508 3.61263 3.80383 4.03627 4.05294 4.12093 4.19821 4.37815 4.42878 4.63060 4.67237 4.69600 4.82762 4.92374 5.01967 5.07215 5.28177 5.34744 5.44045 5.51972 5.82455 5.90202 6.13200 6.72627 6.89697 8.06770 8.52830 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026414 B = 0.005336 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.774866 B = 5245.897158 C = 5868.836423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.031 3.969 3 Si 1.002 2.998 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.486 4.486 8 H 0.088 0.912 9 C 0.355 3.645 10 N -0.642 5.642 11 C 0.004 3.996 12 C 0.065 3.935 13 H 0.062 0.938 14 C -0.064 4.064 15 C -0.084 4.084 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.050 4.050 21 Cl -0.076 7.076 22 O -0.375 6.375 23 H 0.280 0.720 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.154 0.846 30 H 0.165 0.835 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.350 -13.461 1.150 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.523 4.523 8 H 0.106 0.894 9 C 0.155 3.845 10 N -0.390 5.390 11 C -0.127 4.127 12 C 0.006 3.994 13 H 0.080 0.920 14 C -0.102 4.102 15 C -0.085 4.085 16 C -0.127 4.127 17 C -0.132 4.132 18 C -0.126 4.126 19 C -0.134 4.134 20 C -0.076 4.076 21 Cl -0.047 7.047 22 O -0.284 6.284 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.121 0.879 28 H 0.142 0.858 29 H 0.171 0.829 30 H 0.183 0.817 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.445 -13.060 1.178 15.079 hybrid contribution 0.004 -0.010 0.135 0.136 sum 7.449 -13.070 1.313 15.101 Atomic orbital electron populations 1.70137 1.09025 1.29355 1.31533 1.26867 0.95732 1.04183 0.92187 0.84931 0.78657 0.74725 0.79600 1.18395 1.19136 1.17774 1.19034 0.94523 0.87613 1.51169 0.89433 1.22335 0.88529 0.84928 0.88750 1.76141 1.09726 1.10961 1.42126 1.23847 0.96660 0.92752 0.99403 1.23714 0.88849 0.89068 0.97750 0.91965 1.20638 0.95543 0.93483 1.00491 1.19733 0.96618 0.97168 0.95006 1.21207 0.92459 0.98905 1.00081 1.21583 0.97678 0.96303 0.97644 1.21502 0.98955 0.98085 0.94101 1.21334 0.90551 1.00229 1.01314 1.21010 0.89570 1.02479 0.94554 1.98346 1.40805 1.95220 1.70342 1.86915 1.40579 1.17094 1.83775 0.90932 0.92919 0.91796 0.90311 0.87859 0.85777 0.82881 0.81716 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.49 11.74 21.87 0.26 -44.23 16 2 C 0.03 1.64 5.50 85.36 0.47 2.11 16 3 Si 1.00 39.61 29.56 68.60 2.03 41.64 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.49 -28.00 9.50 23.49 0.22 -27.78 16 8 H 0.09 4.75 7.85 -2.91 -0.02 4.72 16 9 C 0.35 20.98 7.43 85.61 0.64 21.62 16 10 N -0.64 -38.44 9.69 -456.22 -4.42 -42.86 16 11 C 0.00 0.20 7.68 86.78 0.67 0.87 16 12 C 0.06 2.84 3.71 31.21 0.12 2.96 16 13 H 0.06 2.78 8.04 -2.39 -0.02 2.76 16 14 C -0.06 -2.22 4.58 29.85 0.14 -2.08 16 15 C -0.08 -2.67 4.99 -19.84 -0.10 -2.77 16 16 C -0.11 -3.16 9.68 22.27 0.22 -2.94 16 17 C -0.11 -2.56 10.05 22.27 0.22 -2.34 16 18 C -0.11 -2.13 10.05 22.27 0.22 -1.90 16 19 C -0.12 -2.62 9.83 22.29 0.22 -2.40 16 20 C -0.05 -1.41 6.31 22.32 0.14 -1.27 16 21 Cl -0.08 -2.10 27.29 -2.72 -0.07 -2.17 16 22 O -0.38 -19.71 10.75 -84.81 -0.91 -20.62 16 23 H 0.28 14.47 8.29 -92.70 -0.77 13.70 16 24 H 0.05 2.43 7.91 -2.39 -0.02 2.41 16 25 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.08 2.71 8.05 -2.39 -0.02 2.69 16 27 H 0.10 3.17 7.12 -2.39 -0.02 3.15 16 28 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 29 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 31 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -69.43 287.30 1.19 -68.24 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.14 Total: 15.92 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 3.17 Total: -15.92 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -4.16 Total: -87.09 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.91 Total: -20.62 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.07 Total: -2.17 kcal Total: -69.43 1.19 -68.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260695016.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.254 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds