Wall clock time and date at job start Mon Mar 30 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.28648 * 122.93581 * 0.02562 * 10 9 7 12 12 C 1.47603 * 108.54606 * 179.56933 * 11 10 9 13 13 H 1.09003 * 110.94304 * 103.23263 * 12 11 10 14 14 C 1.50699 * 110.94045 * 226.89517 * 12 11 10 15 15 C 1.38242 * 119.99152 * 38.27578 * 14 12 11 16 16 C 1.38208 * 120.01287 * 179.72321 * 15 14 12 17 17 C 1.38354 * 119.98925 * 0.55002 * 16 15 14 18 18 Cl 1.73599 * 120.01466 * 179.74780 * 17 16 15 19 19 C 1.38346 * 119.97390 * 359.72136 * 17 16 15 20 20 C 1.38223 * 119.98460 * 0.02562 * 19 17 16 21 21 C 1.54844 * 101.89366 * 345.04620 * 12 11 10 22 22 O 1.34589 * 122.94576 * 179.70391 * 10 9 7 23 23 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 25 25 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 26 26 H 1.07998 * 119.99268 * 359.97438 * 15 14 12 27 27 H 1.08001 * 120.00778 * 180.27330 * 16 15 14 28 28 H 1.08001 * 120.01208 * 179.97438 * 19 17 16 29 29 H 1.07997 * 119.99081 * 180.02562 * 20 19 17 30 30 H 1.09004 * 111.07705 * 141.22855 * 21 12 11 31 31 H 1.09005 * 111.07491 * 265.22042 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2300 -3.6447 0.0133 11 7 3.5052 -3.4748 0.0191 12 6 4.1552 -4.7999 0.0360 13 1 4.5419 -5.0568 -0.9503 14 6 5.2498 -4.8498 1.0706 15 6 5.0807 -4.2146 2.2867 16 6 6.0819 -4.2648 3.2381 17 6 7.2583 -4.9414 2.9688 18 17 8.5191 -4.9994 4.1609 19 6 7.4294 -5.5722 1.7495 20 6 6.4252 -5.5256 0.8008 21 6 2.9792 -5.7273 0.4291 22 8 1.8470 -4.9349 0.0208 23 1 -0.4851 -0.8400 -0.0004 24 1 0.6205 -2.5547 0.8933 25 1 0.6280 -2.5591 -0.8867 26 1 4.1643 -3.6824 2.4949 27 1 5.9479 -3.7723 4.1898 28 1 8.3476 -6.1001 1.5385 29 1 6.5585 -6.0184 -0.1510 30 1 3.0213 -6.6680 -0.1200 31 1 2.9623 -5.9044 1.5046 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260716718.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:31 Heat of formation + Delta-G solvation = -0.406131 kcal Electronic energy + Delta-G solvation = -16986.772857 eV Core-core repulsion = 14066.406020 eV Total energy + Delta-G solvation = -2920.366837 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95620 -39.11207 -36.59668 -33.96744 -33.57589 -31.54984 -31.10784 -29.26248 -27.05076 -23.81775 -23.32353 -22.86489 -20.90669 -19.77708 -17.35111 -16.68922 -16.64202 -15.93773 -15.30219 -15.07821 -14.53080 -13.74976 -13.67787 -13.56822 -13.39603 -12.73929 -12.62971 -12.43367 -12.00850 -11.58085 -11.57172 -11.18831 -11.15825 -10.90792 -10.63862 -10.54891 -10.08090 -9.59735 -9.09730 -8.81009 -8.68673 -8.51421 -8.32708 -6.40108 -4.10390 1.03636 1.23626 2.01669 2.78959 3.47103 3.50055 3.50663 3.66277 3.78701 4.54825 4.60692 4.67831 4.77732 4.80869 5.00161 5.09888 5.29097 5.33331 5.36490 5.53528 5.59506 5.73436 5.92740 6.07220 6.16200 6.30394 6.54762 6.72565 6.80474 7.00541 7.01246 7.90248 8.48145 8.56777 8.86768 9.58932 10.99742 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.004956 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.038375 B = 5648.231408 C = 6659.535461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 1.078 2.922 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.590 4.590 8 H 0.078 0.922 9 C 0.071 3.929 10 C 0.330 3.670 11 N -0.520 5.520 12 C 0.050 3.950 13 H 0.098 0.902 14 C -0.056 4.056 15 C -0.078 4.078 16 C -0.110 4.110 17 C -0.037 4.037 18 Cl -0.079 7.079 19 C -0.114 4.114 20 C -0.101 4.101 21 C 0.026 3.974 22 O -0.354 6.354 23 H 0.268 0.732 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.450 -13.103 4.473 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.187 4.187 3 Si 0.907 3.093 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.628 4.628 8 H 0.096 0.904 9 C 0.034 3.966 10 C 0.107 3.893 11 N -0.255 5.255 12 C -0.060 4.060 13 H 0.116 0.884 14 C -0.056 4.056 15 C -0.096 4.096 16 C -0.128 4.128 17 C -0.064 4.064 18 Cl -0.050 7.050 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.051 4.051 22 O -0.259 6.259 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.122 0.878 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.853 -10.975 4.518 17.495 hybrid contribution 0.111 -2.530 0.103 2.535 sum 12.963 -13.505 4.621 19.282 Atomic orbital electron populations 1.70760 1.06929 1.30506 1.46998 1.25882 0.96386 1.02770 0.93680 0.83400 0.74678 0.74398 0.76869 1.21228 1.21384 1.21395 1.22038 0.95990 0.89506 1.55270 0.90404 1.18324 0.91963 0.87729 0.98626 1.26734 0.93208 0.83893 0.85499 1.75198 1.05271 1.18559 1.26492 1.22561 0.94489 0.91201 0.97732 0.88393 1.19634 0.94679 0.96883 0.94422 1.21062 0.99328 0.97017 0.92224 1.21070 0.92065 0.99198 1.00497 1.20916 0.90993 1.02868 0.91587 1.98356 1.52060 1.97521 1.57075 1.20940 0.99883 1.00324 0.92082 1.20952 0.92437 0.99416 0.99212 1.24501 0.84056 0.95545 1.01013 1.86968 1.38398 1.18158 1.82346 0.92211 0.93868 0.93905 0.84730 0.84878 0.85036 0.85130 0.87836 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.06 13.65 55.43 0.76 -26.30 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.08 25.35 29.90 -169.99 -5.08 20.26 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.59 -16.35 8.95 -34.44 -0.31 -16.65 16 8 H 0.08 2.22 6.77 -52.49 -0.36 1.86 16 9 C 0.07 1.77 4.91 -29.04 -0.14 1.63 16 10 C 0.33 7.24 7.68 -13.61 -0.10 7.13 16 11 N -0.52 -11.04 9.15 -51.72 -0.47 -11.51 16 12 C 0.05 0.81 3.97 -67.51 -0.27 0.54 16 13 H 0.10 1.44 8.05 -51.93 -0.42 1.03 16 14 C -0.06 -0.81 5.01 -104.62 -0.52 -1.33 16 15 C -0.08 -1.17 9.19 -39.59 -0.36 -1.54 16 16 C -0.11 -1.45 9.83 -39.55 -0.39 -1.84 16 17 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 18 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.38 16 19 C -0.11 -1.28 9.83 -39.55 -0.39 -1.67 16 20 C -0.10 -1.21 9.69 -39.58 -0.38 -1.59 16 21 C 0.03 0.38 7.70 38.13 0.29 0.67 16 22 O -0.35 -6.79 11.16 -15.54 -0.17 -6.96 16 23 H 0.27 7.77 7.22 -40.82 -0.29 7.47 16 24 H 0.04 1.09 8.00 -51.93 -0.42 0.67 16 25 H 0.04 1.09 8.01 -51.93 -0.42 0.67 16 26 H 0.13 2.25 7.72 -52.49 -0.41 1.85 16 27 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.13 1.23 8.05 -52.49 -0.42 0.81 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.07 7.79 -51.93 -0.40 0.67 16 LS Contribution 288.57 15.07 4.35 4.35 Total: -1.00 -30.16 288.57 -8.25 -38.41 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -3.20 Total: -0.86 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -2.93 Total: -15.00 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.28 Total: -37.82 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.17 Total: -6.96 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.26 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.16 -8.25 -38.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260716718.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.001 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds