Wall clock time and date at job start Mon Mar 30 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.28648 * 122.93581 * 0.02562 * 10 9 7 12 12 C 1.47603 * 108.54606 * 179.56933 * 11 10 9 13 13 H 1.09003 * 110.94304 * 103.23263 * 12 11 10 14 14 C 1.50699 * 110.94045 * 226.89517 * 12 11 10 15 15 C 1.38242 * 119.99152 * 38.27578 * 14 12 11 16 16 C 1.38208 * 120.01287 * 179.72321 * 15 14 12 17 17 C 1.38354 * 119.98925 * 0.55002 * 16 15 14 18 18 Cl 1.73599 * 120.01466 * 179.74780 * 17 16 15 19 19 C 1.38346 * 119.97390 * 359.72136 * 17 16 15 20 20 C 1.38223 * 119.98460 * 0.02562 * 19 17 16 21 21 C 1.54844 * 101.89366 * 345.04620 * 12 11 10 22 22 O 1.34589 * 122.94576 * 179.70391 * 10 9 7 23 23 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 25 25 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 26 26 H 1.07998 * 119.99268 * 359.97438 * 15 14 12 27 27 H 1.08001 * 120.00778 * 180.27330 * 16 15 14 28 28 H 1.08001 * 120.01208 * 179.97438 * 19 17 16 29 29 H 1.07997 * 119.99081 * 180.02562 * 20 19 17 30 30 H 1.09004 * 111.07705 * 141.22855 * 21 12 11 31 31 H 1.09005 * 111.07491 * 265.22042 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2300 -3.6447 0.0133 11 7 3.5052 -3.4748 0.0191 12 6 4.1552 -4.7999 0.0360 13 1 4.5419 -5.0568 -0.9503 14 6 5.2498 -4.8498 1.0706 15 6 5.0807 -4.2146 2.2867 16 6 6.0819 -4.2648 3.2381 17 6 7.2583 -4.9414 2.9688 18 17 8.5191 -4.9994 4.1609 19 6 7.4294 -5.5722 1.7495 20 6 6.4252 -5.5256 0.8008 21 6 2.9792 -5.7273 0.4291 22 8 1.8470 -4.9349 0.0208 23 1 -0.4851 -0.8400 -0.0004 24 1 0.6205 -2.5547 0.8933 25 1 0.6280 -2.5591 -0.8867 26 1 4.1643 -3.6824 2.4949 27 1 5.9479 -3.7723 4.1898 28 1 8.3476 -6.1001 1.5385 29 1 6.5585 -6.0184 -0.1510 30 1 3.0213 -6.6680 -0.1200 31 1 2.9623 -5.9044 1.5046 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260716718.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:31 Heat of formation + Delta-G solvation = -19.741997 kcal Electronic energy + Delta-G solvation = -16987.611323 eV Core-core repulsion = 14066.406020 eV Total energy + Delta-G solvation = -2921.205303 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.36687 -40.16533 -37.53024 -35.96440 -34.95324 -33.12709 -32.11198 -30.70208 -28.64473 -25.48816 -24.89816 -23.85510 -22.05354 -21.44788 -18.74458 -18.40312 -18.01461 -17.23086 -16.58009 -16.22136 -15.82051 -15.59672 -14.83789 -14.58569 -14.52815 -14.50785 -14.22316 -13.91188 -13.64263 -12.82606 -12.69719 -12.57919 -12.41221 -12.38310 -12.24712 -11.90889 -11.82983 -11.19836 -10.72065 -10.58814 -10.14562 -10.07771 -9.59857 -8.65492 -6.35597 0.01980 0.25331 1.07881 1.15833 1.56150 1.64367 1.83513 2.30552 2.49289 2.61008 3.18046 3.32948 3.48967 3.69093 3.78599 3.90120 3.96805 4.30330 4.31431 4.41088 4.58020 4.61911 4.74592 4.85476 4.92675 4.96693 5.13546 5.16825 5.29572 5.52967 5.72682 5.83627 6.30396 6.57809 6.93235 7.40937 8.75844 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.004956 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.038375 B = 5648.231408 C = 6659.535461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.031 4.031 3 Si 1.122 2.878 4 H -0.277 1.277 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.596 4.596 8 H 0.067 0.933 9 C 0.072 3.928 10 C 0.320 3.680 11 N -0.542 5.542 12 C 0.050 3.950 13 H 0.117 0.883 14 C -0.071 4.071 15 C -0.099 4.099 16 C -0.116 4.116 17 C -0.041 4.041 18 Cl -0.067 7.067 19 C -0.106 4.106 20 C -0.092 4.092 21 C 0.026 3.974 22 O -0.364 6.364 23 H 0.259 0.741 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.106 0.894 27 H 0.140 0.860 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.145 0.855 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.865 -14.367 4.260 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.228 4.228 3 Si 0.944 3.056 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.634 4.634 8 H 0.086 0.914 9 C 0.034 3.966 10 C 0.095 3.905 11 N -0.278 5.278 12 C -0.060 4.060 13 H 0.135 0.865 14 C -0.071 4.071 15 C -0.118 4.118 16 C -0.134 4.134 17 C -0.067 4.067 18 Cl -0.038 7.038 19 C -0.124 4.124 20 C -0.110 4.110 21 C -0.049 4.049 22 O -0.269 6.269 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.124 0.876 27 H 0.157 0.843 28 H 0.179 0.821 29 H 0.180 0.820 30 H 0.163 0.837 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.268 -12.273 4.312 20.058 hybrid contribution -0.529 -2.256 0.217 2.327 sum 14.739 -14.529 4.529 21.186 Atomic orbital electron populations 1.70862 1.07748 1.30073 1.48898 1.27247 0.96495 1.06241 0.92861 0.82839 0.73996 0.71156 0.77577 1.20259 1.20280 1.20353 1.22242 0.95648 0.90913 1.54615 0.91441 1.18034 0.92367 0.88626 0.97546 1.25973 0.92883 0.84364 0.87304 1.75065 1.05275 1.22542 1.24918 1.22696 0.95076 0.88861 0.99336 0.86542 1.19607 0.95451 0.98352 0.93714 1.20912 0.99067 0.98257 0.93556 1.21120 0.92236 0.99613 1.00480 1.21055 0.90840 1.02464 0.92369 1.98364 1.51268 1.97436 1.56735 1.21302 1.00666 0.99332 0.91147 1.21238 0.91008 0.98281 1.00480 1.24833 0.81869 0.96044 1.02199 1.86924 1.40341 1.17197 1.82426 0.93171 0.94987 0.95093 0.87625 0.84256 0.82079 0.82019 0.83700 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.63 13.65 21.45 0.29 -56.34 16 2 C -0.03 -1.77 5.46 84.66 0.46 -1.30 16 3 Si 1.12 51.13 29.90 68.60 2.05 53.18 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.60 -33.91 8.95 25.60 0.23 -33.68 16 8 H 0.07 3.93 6.77 -2.91 -0.02 3.91 16 9 C 0.07 3.73 4.91 29.10 0.14 3.87 16 10 C 0.32 14.30 7.68 88.58 0.68 14.98 16 11 N -0.54 -23.16 9.15 -432.78 -3.96 -27.13 16 12 C 0.05 1.52 3.97 44.66 0.18 1.70 16 13 H 0.12 3.11 8.05 -2.39 -0.02 3.09 16 14 C -0.07 -1.93 5.01 -19.86 -0.10 -2.03 16 15 C -0.10 -2.98 9.19 22.26 0.20 -2.78 16 16 C -0.12 -2.97 9.83 22.29 0.22 -2.75 16 17 C -0.04 -0.90 6.32 22.32 0.14 -0.76 16 18 Cl -0.07 -1.33 28.96 -2.72 -0.08 -1.41 16 19 C -0.11 -2.02 9.83 22.29 0.22 -1.80 16 20 C -0.09 -1.86 9.69 22.27 0.22 -1.64 16 21 C 0.03 0.73 7.70 72.61 0.56 1.29 16 22 O -0.36 -13.90 11.16 -78.54 -0.88 -14.78 16 23 H 0.26 15.58 7.22 -92.71 -0.67 14.91 16 24 H 0.03 1.71 8.00 -2.39 -0.02 1.69 16 25 H 0.03 1.66 8.01 -2.39 -0.02 1.64 16 26 H 0.11 3.73 7.72 -2.91 -0.02 3.71 16 27 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 28 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.16 2.25 8.05 -2.91 -0.02 2.22 16 30 H 0.15 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.08 2.22 7.79 -2.38 -0.02 2.20 16 Total: -1.00 -66.02 288.57 1.82 -64.20 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.24 Total: 7.18 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 3.15 Total: -24.92 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -3.67 Total: -83.46 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.88 Total: -14.78 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -66.02 1.82 -64.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260716718.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.459 kcal (2) G-P(sol) polarization free energy of solvation -66.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds