Wall clock time and date at job start Mon Mar 30 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.47064 * 179.97438 * 9 7 2 11 11 N 1.28637 * 122.94281 * 359.73260 * 10 9 7 12 12 C 1.47596 * 108.55339 * 180.26056 * 11 10 9 13 13 H 1.08998 * 111.15212 * 257.12185 * 12 11 10 14 14 C 1.50693 * 110.82199 * 133.38936 * 12 11 10 15 15 C 1.38234 * 119.98966 * 327.35956 * 14 12 11 16 16 C 1.38216 * 120.01480 * 179.72769 * 15 14 12 17 17 C 1.38358 * 119.98276 * 0.54078 * 16 15 14 18 18 Cl 1.73603 * 120.01013 * 179.74828 * 17 16 15 19 19 C 1.38351 * 119.97542 * 359.73183 * 17 16 15 20 20 C 1.38211 * 119.98451 * 0.02562 * 19 17 16 21 21 C 1.54853 * 101.83355 * 15.32574 * 12 11 10 22 22 O 1.34601 * 122.93582 * 180.02562 * 10 9 7 23 23 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 25 25 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 26 26 H 1.07997 * 119.99190 * 359.97438 * 15 14 12 27 27 H 1.07992 * 120.01002 * 180.27420 * 16 15 14 28 28 H 1.07994 * 120.00474 * 180.02562 * 19 17 16 29 29 H 1.08002 * 119.99471 * 179.97438 * 20 19 17 30 30 H 1.09012 * 111.07167 * 218.56692 * 21 12 11 31 31 H 1.08998 * 111.07940 * 94.53324 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0140 -2.6147 0.0124 11 7 3.2294 -3.6340 0.0233 12 6 4.0518 -4.8596 0.0342 13 1 4.0816 -5.3220 -0.9524 14 6 3.5480 -5.8336 1.0678 15 6 2.9780 -5.3665 2.2374 16 6 2.5106 -6.2594 3.1833 17 6 2.6235 -7.6208 2.9643 18 17 2.0427 -8.7429 4.1549 19 6 3.1992 -8.0877 1.7961 20 6 3.6616 -7.1938 0.8487 21 6 5.4430 -4.3050 0.4277 22 8 5.3230 -2.9281 0.0141 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6844 -0.8877 25 1 3.8753 -0.6757 0.8924 26 1 2.8942 -4.3038 2.4103 27 1 2.0614 -5.8944 4.0950 28 1 3.2872 -9.1503 1.6245 29 1 4.1114 -7.5581 -0.0631 30 1 6.2366 -4.8116 -0.1216 31 1 5.6044 -4.3787 1.5032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260716719.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:32 Heat of formation + Delta-G solvation = 8.740895 kcal Electronic energy + Delta-G solvation = -16966.051871 eV Core-core repulsion = 14046.081679 eV Total energy + Delta-G solvation = -2919.970192 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.93864 -39.06501 -36.54815 -33.75992 -33.40983 -31.63985 -31.06091 -29.63491 -27.62279 -23.74678 -23.23205 -22.79088 -20.87408 -19.44622 -17.31946 -16.93327 -16.33931 -15.86941 -15.30892 -15.01330 -14.45093 -14.18727 -13.67326 -13.51094 -13.35530 -12.83532 -12.59541 -12.57294 -11.97924 -11.51766 -11.49415 -11.34160 -11.14715 -10.85568 -10.74098 -10.51264 -9.99418 -9.78331 -9.08336 -9.03160 -8.78362 -8.59783 -8.41124 -6.05528 -4.06152 1.08795 1.29429 2.06709 2.78151 3.27534 3.35528 3.36258 3.55990 3.77670 4.39379 4.62505 4.69299 4.83434 4.85602 5.02270 5.11617 5.25504 5.33128 5.38998 5.55110 5.64876 5.77402 5.98500 6.10082 6.21127 6.31303 6.59497 6.64524 6.79317 6.88577 6.97716 7.52179 8.36796 8.58098 9.15874 9.51535 11.06732 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.004588 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.510755 B = 6101.192512 C = 6859.107298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.868 3.132 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.101 0.899 9 C 0.051 3.949 10 C 0.329 3.671 11 N -0.512 5.512 12 C 0.050 3.950 13 H 0.100 0.900 14 C -0.057 4.057 15 C -0.075 4.075 16 C -0.110 4.110 17 C -0.037 4.037 18 Cl -0.080 7.080 19 C -0.115 4.115 20 C -0.103 4.103 21 C 0.027 3.973 22 O -0.355 6.355 23 H 0.265 0.735 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.838 -14.207 4.464 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.201 1.201 5 H -0.189 1.189 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.119 0.881 9 C 0.013 3.987 10 C 0.104 3.896 11 N -0.247 5.247 12 C -0.060 4.060 13 H 0.118 0.882 14 C -0.058 4.058 15 C -0.094 4.094 16 C -0.128 4.128 17 C -0.064 4.064 18 Cl -0.051 7.051 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.051 4.051 22 O -0.259 6.259 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.122 0.878 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.953 -14.354 4.511 17.509 hybrid contribution 1.038 0.573 0.107 1.191 sum 9.992 -13.782 4.618 17.638 Atomic orbital electron populations 1.69877 1.06111 1.26865 1.50417 1.24911 0.94764 0.98570 0.94726 0.86966 0.80494 0.84298 0.78713 1.20067 1.18928 1.21078 1.21001 0.87165 0.96058 1.51152 0.88135 1.18630 0.98635 0.82484 0.98914 1.26456 0.77825 0.99088 0.86203 1.75212 1.28019 0.95861 1.25593 1.22561 0.90661 0.94862 0.97877 0.88211 1.19622 0.98318 0.93181 0.94672 1.21118 0.95406 1.00671 0.92184 1.21092 1.00391 0.90818 1.00525 1.20928 1.02653 0.90621 0.92160 1.98355 1.87611 1.62042 1.57094 1.20921 0.99496 1.00267 0.92640 1.20933 1.00033 0.92056 0.99128 1.24534 0.98694 0.80800 1.01028 1.86995 1.27790 1.28852 1.82291 0.92541 0.93062 0.93475 0.84385 0.84868 0.85094 0.85170 0.87814 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 20.41 27.46 -169.99 -4.67 15.74 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.26 -5.87 6.55 56.52 0.37 -5.50 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.23 9.51 -34.44 -0.33 -14.56 16 8 H 0.10 3.08 7.01 -52.49 -0.37 2.71 16 9 C 0.05 1.18 4.67 -29.03 -0.14 1.05 16 10 C 0.33 6.89 7.68 -13.62 -0.10 6.78 16 11 N -0.51 -10.71 8.94 -51.73 -0.46 -11.18 16 12 C 0.05 0.80 3.98 -67.51 -0.27 0.53 16 13 H 0.10 1.45 8.09 -51.93 -0.42 1.03 16 14 C -0.06 -0.83 5.00 -104.62 -0.52 -1.35 16 15 C -0.08 -1.16 9.35 -39.59 -0.37 -1.53 16 16 C -0.11 -1.49 9.83 -39.55 -0.39 -1.88 16 17 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 18 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.41 16 19 C -0.11 -1.31 9.83 -39.55 -0.39 -1.70 16 20 C -0.10 -1.22 9.70 -39.59 -0.38 -1.61 16 21 C 0.03 0.37 7.73 38.13 0.29 0.67 16 22 O -0.35 -6.44 11.17 -15.58 -0.17 -6.62 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.05 1.16 7.21 -51.93 -0.37 0.78 16 25 H 0.05 1.04 7.56 -51.93 -0.39 0.64 16 26 H 0.14 2.37 7.54 -52.49 -0.40 1.97 16 27 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 28 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.10 1.12 8.14 -51.92 -0.42 0.69 16 31 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 LS Contribution 286.27 15.07 4.31 4.31 Total: -1.00 -30.25 286.27 -7.88 -38.14 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.22 Total: 0.56 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.94 Total: -12.39 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.31 Total: -37.33 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.17 Total: -6.62 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.25 -7.88 -38.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260716719.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.876 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds