Wall clock time and date at job start Mon Mar 30 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.47064 * 179.97438 * 9 7 2 11 11 N 1.28637 * 122.94281 * 359.73260 * 10 9 7 12 12 C 1.47596 * 108.55339 * 180.26056 * 11 10 9 13 13 H 1.08998 * 111.15212 * 257.12185 * 12 11 10 14 14 C 1.50693 * 110.82199 * 133.38936 * 12 11 10 15 15 C 1.38234 * 119.98966 * 327.35956 * 14 12 11 16 16 C 1.38216 * 120.01480 * 179.72769 * 15 14 12 17 17 C 1.38358 * 119.98276 * 0.54078 * 16 15 14 18 18 Cl 1.73603 * 120.01013 * 179.74828 * 17 16 15 19 19 C 1.38351 * 119.97542 * 359.73183 * 17 16 15 20 20 C 1.38211 * 119.98451 * 0.02562 * 19 17 16 21 21 C 1.54853 * 101.83355 * 15.32574 * 12 11 10 22 22 O 1.34601 * 122.93582 * 180.02562 * 10 9 7 23 23 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 25 25 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 26 26 H 1.07997 * 119.99190 * 359.97438 * 15 14 12 27 27 H 1.07992 * 120.01002 * 180.27420 * 16 15 14 28 28 H 1.07994 * 120.00474 * 180.02562 * 19 17 16 29 29 H 1.08002 * 119.99471 * 179.97438 * 20 19 17 30 30 H 1.09012 * 111.07167 * 218.56692 * 21 12 11 31 31 H 1.08998 * 111.07940 * 94.53324 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0140 -2.6147 0.0124 11 7 3.2294 -3.6340 0.0233 12 6 4.0518 -4.8596 0.0342 13 1 4.0816 -5.3220 -0.9524 14 6 3.5480 -5.8336 1.0678 15 6 2.9780 -5.3665 2.2374 16 6 2.5106 -6.2594 3.1833 17 6 2.6235 -7.6208 2.9643 18 17 2.0427 -8.7429 4.1549 19 6 3.1992 -8.0877 1.7961 20 6 3.6616 -7.1938 0.8487 21 6 5.4430 -4.3050 0.4277 22 8 5.3230 -2.9281 0.0141 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6844 -0.8877 25 1 3.8753 -0.6757 0.8924 26 1 2.8942 -4.3038 2.4103 27 1 2.0614 -5.8944 4.0950 28 1 3.2872 -9.1503 1.6245 29 1 4.1114 -7.5581 -0.0631 30 1 6.2366 -4.8116 -0.1216 31 1 5.6044 -4.3787 1.5032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260716719.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:32 Heat of formation + Delta-G solvation = -11.698032 kcal Electronic energy + Delta-G solvation = -16966.938169 eV Core-core repulsion = 14046.081679 eV Total energy + Delta-G solvation = -2920.856490 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.28246 -40.12856 -37.51200 -35.52907 -34.85676 -33.33541 -32.09321 -31.11234 -29.03085 -25.20689 -24.83621 -23.82662 -22.01753 -21.04087 -18.85328 -18.34609 -17.76490 -17.21222 -16.53591 -16.21836 -16.09982 -15.62449 -14.82404 -14.62515 -14.51222 -14.48540 -14.21835 -13.71489 -13.61432 -12.88553 -12.67651 -12.54819 -12.48750 -12.26088 -12.17047 -11.82520 -11.80819 -11.60031 -10.82603 -10.74306 -10.10017 -10.05128 -9.56043 -8.20736 -6.27450 0.05091 0.28086 1.09536 1.24733 1.43678 1.45075 1.55376 2.38608 2.41118 2.53341 3.12395 3.37784 3.54343 3.75605 3.83422 3.93107 4.02790 4.34241 4.36554 4.46782 4.61229 4.66288 4.76643 4.90637 4.95930 5.05732 5.17175 5.19910 5.34195 5.53285 5.57620 5.76112 6.33634 6.85896 7.04675 7.34341 8.95227 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.004588 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.510755 B = 6101.192512 C = 6859.107298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.238 1.238 6 H -0.286 1.286 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.052 3.948 10 C 0.319 3.681 11 N -0.549 5.549 12 C 0.048 3.952 13 H 0.116 0.884 14 C -0.071 4.071 15 C -0.099 4.099 16 C -0.118 4.118 17 C -0.042 4.042 18 Cl -0.068 7.068 19 C -0.107 4.107 20 C -0.093 4.093 21 C 0.029 3.971 22 O -0.359 6.359 23 H 0.266 0.734 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.137 0.863 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.258 -15.354 4.158 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.161 1.161 6 H -0.212 1.212 7 C -0.559 4.559 8 H 0.073 0.927 9 C 0.014 3.986 10 C 0.094 3.906 11 N -0.285 5.285 12 C -0.061 4.061 13 H 0.133 0.867 14 C -0.072 4.072 15 C -0.117 4.117 16 C -0.137 4.137 17 C -0.068 4.068 18 Cl -0.039 7.039 19 C -0.125 4.125 20 C -0.111 4.111 21 C -0.047 4.047 22 O -0.264 6.264 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.155 0.845 28 H 0.179 0.821 29 H 0.182 0.818 30 H 0.164 0.836 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.405 -15.527 4.211 19.720 hybrid contribution 0.229 0.721 0.243 0.795 sum 11.634 -14.805 4.454 19.349 Atomic orbital electron populations 1.70053 1.08374 1.28087 1.52413 1.25880 0.95578 1.03070 0.94201 0.85760 0.79815 0.78347 0.79387 1.19000 1.16132 1.21214 1.21136 0.89779 0.94505 1.50433 0.92690 1.18438 0.95557 0.84721 0.99904 1.25925 0.79104 0.98231 0.87316 1.75134 1.30376 0.98083 1.24866 1.22695 0.90930 0.93327 0.99166 0.86668 1.19647 0.99221 0.94296 0.93999 1.20949 0.97570 0.99469 0.93757 1.21127 1.00622 0.91478 1.00464 1.21057 1.02518 0.90312 0.92951 1.98360 1.87477 1.61324 1.56772 1.21298 0.97848 1.01775 0.91593 1.21240 0.99026 0.90614 1.00230 1.24833 0.98826 0.78810 1.02218 1.86952 1.25945 1.31123 1.82330 0.92470 0.91967 0.92036 0.87531 0.84525 0.82071 0.81844 0.83609 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 2 C 0.01 0.54 5.47 84.65 0.46 1.01 16 3 Si 0.94 42.11 27.46 68.60 1.88 43.99 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.24 -9.54 6.55 99.48 0.65 -8.88 16 6 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.52 -29.68 9.51 25.60 0.24 -29.44 16 8 H 0.05 3.57 7.01 -2.91 -0.02 3.55 16 9 C 0.05 2.37 4.67 29.10 0.14 2.51 16 10 C 0.32 13.41 7.68 88.58 0.68 14.09 16 11 N -0.55 -23.47 8.94 -432.79 -3.87 -27.34 16 12 C 0.05 1.47 3.98 44.67 0.18 1.65 16 13 H 0.12 3.10 8.09 -2.39 -0.02 3.08 16 14 C -0.07 -2.00 5.00 -19.87 -0.10 -2.09 16 15 C -0.10 -3.12 9.35 22.26 0.21 -2.91 16 16 C -0.12 -3.24 9.83 22.29 0.22 -3.02 16 17 C -0.04 -0.98 6.32 22.33 0.14 -0.84 16 18 Cl -0.07 -1.44 28.96 -2.72 -0.08 -1.51 16 19 C -0.11 -2.13 9.83 22.29 0.22 -1.91 16 20 C -0.09 -1.93 9.70 22.27 0.22 -1.72 16 21 C 0.03 0.75 7.73 72.61 0.56 1.31 16 22 O -0.36 -12.52 11.17 -78.66 -0.88 -13.40 16 23 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 24 H 0.06 2.72 7.21 -2.39 -0.02 2.70 16 25 H 0.06 2.64 7.56 -2.39 -0.02 2.63 16 26 H 0.11 3.97 7.54 -2.91 -0.02 3.95 16 27 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.15 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.09 2.10 7.91 -2.39 -0.02 2.08 16 Total: -1.00 -68.60 286.27 1.61 -66.99 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.09 Total: 11.61 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 3.17 Total: -21.36 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -3.57 Total: -86.32 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.88 Total: -13.40 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.88 Total: 43.99 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.51 kcal Total: -68.60 1.61 -66.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260716719.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.288 kcal (2) G-P(sol) polarization free energy of solvation -68.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds