Wall clock time and date at job start Mon Mar 30 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48505 * 109.46767 * 270.00215 * 3 2 1 5 5 H 1.48496 * 109.47403 * 29.99758 * 3 2 1 6 6 H 1.48495 * 109.47356 * 150.00258 * 3 2 1 7 7 C 1.37871 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00202 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.97819 * 304.09408 * 9 7 2 11 11 C 1.54845 * 111.07472 * 179.97438 * 9 7 2 12 12 N 1.47601 * 101.89446 * 218.77418 * 11 9 7 13 13 C 1.28644 * 108.54749 * 14.95544 * 12 11 9 14 14 C 1.50695 * 122.94036 * 180.13533 * 13 12 11 15 15 C 1.50696 * 109.47127 * 0.02941 * 14 13 12 16 16 C 1.38243 * 119.98640 * 269.72141 * 15 14 13 17 17 C 1.38215 * 120.01614 * 179.72635 * 16 15 14 18 18 C 1.38359 * 119.98397 * 0.54750 * 17 16 15 19 19 Cl 1.73596 * 120.01204 * 179.70488 * 18 17 16 20 20 C 1.38354 * 119.97174 * 359.72815 * 18 17 16 21 21 C 1.38216 * 119.98764 * 0.02562 * 20 18 17 22 22 O 1.34595 * 114.11832 * 0.40722 * 13 12 11 23 23 H 0.96998 * 120.00135 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.94527 * 100.63027 * 11 9 7 25 25 H 1.08997 * 110.95288 * 336.92995 * 11 9 7 26 26 H 1.09009 * 109.47137 * 120.02458 * 14 13 12 27 27 H 1.09000 * 109.47327 * 240.02671 * 14 13 12 28 28 H 1.07998 * 119.99330 * 0.02562 * 16 15 14 29 29 H 1.07998 * 120.00959 * 180.27311 * 17 16 15 30 30 H 1.07997 * 120.00598 * 179.97438 * 20 18 17 31 31 H 1.08005 * 119.99230 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.5622 -2.5513 0.8448 11 6 2.2239 -3.7038 0.0015 12 7 1.5384 -4.6484 -0.9021 13 6 0.6296 -4.0086 -1.5499 14 6 -0.2711 -4.6664 -2.5633 15 6 0.0740 -6.1296 -2.6671 16 6 1.0191 -6.5533 -3.5827 17 6 1.3402 -7.8945 -3.6746 18 6 0.7072 -8.8146 -2.8577 19 17 1.1043 -10.5002 -2.9778 20 6 -0.2428 -8.3906 -1.9456 21 6 -0.5592 -7.0485 -1.8512 22 8 0.5575 -2.6990 -1.2475 23 1 -0.4850 0.8400 0.0004 24 1 2.3234 -4.1245 1.0021 25 1 3.1971 -3.4188 -0.3983 26 1 -1.3097 -4.5594 -2.2500 27 1 -0.1336 -4.1908 -3.5344 28 1 1.5103 -5.8356 -4.2230 29 1 2.0818 -8.2249 -4.3868 30 1 -0.7375 -9.1083 -1.3080 31 1 -1.3011 -6.7174 -1.1394 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260721517.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:01 Heat of formation + Delta-G solvation = -23.230185 kcal Electronic energy + Delta-G solvation = -16918.691155 eV Core-core repulsion = 13997.334593 eV Total energy + Delta-G solvation = -2921.356562 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.66221 -40.18540 -37.46388 -35.29299 -34.41643 -33.65649 -31.95352 -30.94475 -28.35981 -26.26807 -23.74275 -23.27852 -22.77184 -20.60770 -18.96365 -17.98112 -17.21849 -17.02545 -16.71740 -16.41583 -16.10518 -15.34798 -14.56662 -14.45177 -14.38324 -14.19461 -13.84334 -13.62647 -13.51192 -12.99982 -12.84567 -12.51668 -12.37125 -12.33297 -12.23660 -11.85855 -11.71213 -11.48755 -10.85289 -10.78830 -9.91454 -9.70944 -9.49194 -8.33943 -6.58664 0.19575 0.42894 1.19658 1.38146 1.39485 1.43349 1.52272 2.32080 2.49864 2.85865 3.27182 3.43069 3.85804 3.93014 4.02633 4.18674 4.29776 4.43239 4.44129 4.65176 4.69252 4.69751 4.78494 5.01486 5.07431 5.26873 5.31398 5.33920 5.54264 5.64334 5.73046 5.90264 6.03378 6.55429 7.10173 7.21273 8.74711 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.053091 B = 0.003729 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.270308 B = 7506.642409 C = 7611.351554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.027 3.973 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.178 3.822 10 H 0.024 0.976 11 C 0.005 3.995 12 N -0.567 5.567 13 C 0.282 3.718 14 C -0.007 4.007 15 C -0.061 4.061 16 C -0.096 4.096 17 C -0.114 4.114 18 C -0.046 4.046 19 Cl -0.074 7.074 20 C -0.114 4.114 21 C -0.098 4.098 22 O -0.359 6.359 23 H 0.270 0.730 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 -14.575 -7.088 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.595 4.595 8 H 0.090 0.910 9 C 0.123 3.877 10 H 0.041 0.959 11 C -0.124 4.124 12 N -0.306 5.306 13 C 0.058 3.942 14 C -0.045 4.045 15 C -0.061 4.061 16 C -0.114 4.114 17 C -0.132 4.132 18 C -0.072 4.072 19 Cl -0.046 7.046 20 C -0.132 4.132 21 C -0.116 4.116 22 O -0.262 6.262 23 H 0.079 0.921 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.157 0.843 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.046 -15.218 -7.046 16.802 hybrid contribution 0.291 1.559 0.485 1.658 sum -0.755 -13.659 -6.562 15.172 Atomic orbital electron populations 1.70116 1.07844 1.28566 1.46909 1.26064 0.95791 1.03606 0.92192 0.85329 0.78782 0.77538 0.78678 1.19724 1.20015 1.18446 1.21340 0.93311 0.90333 1.54484 0.91017 1.21575 0.89340 0.95473 0.81273 0.95864 1.23885 0.98923 0.91274 0.98348 1.74616 1.10936 1.30598 1.14451 1.26110 0.92276 0.82265 0.93597 1.19353 0.97674 0.90738 0.96744 1.19494 0.96819 0.93591 0.96230 1.21126 0.96274 0.95513 0.98525 1.21163 1.00226 0.92212 0.99606 1.21036 1.00346 0.85236 1.00583 1.98351 1.93377 1.15202 1.97625 1.21154 0.97424 0.96394 0.98249 1.21121 1.00108 0.92209 0.98131 1.87296 1.73678 1.23438 1.41774 0.92050 0.89534 0.90934 0.86381 0.86260 0.84329 0.83552 0.83589 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.99 13.23 21.45 0.28 -51.71 16 2 C 0.03 1.50 5.46 84.65 0.46 1.97 16 3 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.56 -31.09 8.83 25.60 0.23 -30.86 16 8 H 0.07 3.85 7.61 -2.91 -0.02 3.83 16 9 C 0.18 9.45 3.48 30.48 0.11 9.55 16 10 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 11 C 0.01 0.24 7.68 86.80 0.67 0.90 16 12 N -0.57 -24.01 10.78 -449.44 -4.85 -28.85 16 13 C 0.28 11.65 7.68 88.57 0.68 12.33 16 14 C -0.01 -0.21 5.97 29.10 0.17 -0.04 16 15 C -0.06 -1.61 4.44 -19.86 -0.09 -1.70 16 16 C -0.10 -2.35 9.70 22.27 0.22 -2.13 16 17 C -0.11 -2.56 9.83 22.29 0.22 -2.34 16 18 C -0.05 -1.04 6.32 22.33 0.14 -0.90 16 19 Cl -0.07 -1.53 28.96 -2.72 -0.08 -1.61 16 20 C -0.11 -2.58 9.83 22.29 0.22 -2.36 16 21 C -0.10 -2.40 9.70 22.27 0.22 -2.18 16 22 O -0.36 -18.56 10.81 -78.60 -0.85 -19.41 16 23 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 25 H 0.07 3.30 7.77 -2.39 -0.02 3.28 16 26 H 0.12 3.01 8.09 -2.38 -0.02 2.99 16 27 H 0.12 3.00 8.08 -2.39 -0.02 2.98 16 28 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -64.48 291.94 0.91 -63.57 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.14 Total: 11.53 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 3.24 Total: -17.76 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -4.56 Total: -80.57 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.85 Total: -19.41 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -64.48 0.91 -63.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260721517.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.339 kcal (2) G-P(sol) polarization free energy of solvation -64.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds